Polaris app_run changes #1135
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| name: CI Tests | |
| on: | |
| push: | |
| branches: | |
| - main | |
| paths-ignore: | |
| - 'mkdocs.yml' | |
| - 'docs/**' | |
| pull_request: {} | |
| jobs: | |
| lint: | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 5 | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: set up python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: 3.9 | |
| - name: Install Balsam | |
| run: | | |
| make install-dev | |
| pip freeze | |
| - name: Lint | |
| run: make lint | |
| - name: Check default Site settings.yml files | |
| run: make validate-defaults | |
| - name: Mypy (type checking) | |
| run: make mypy | |
| test-linux: | |
| name: Testing with Python${{ matrix.python-version }} on Ubuntu | |
| needs: lint | |
| runs-on: ubuntu-latest | |
| services: | |
| postgres: | |
| # Docker Hub image | |
| image: postgres | |
| env: | |
| POSTGRES_PASSWORD: postgres | |
| POSTGRES_DB: balsam-test | |
| # Set health checks to wait until postgres has started | |
| options: >- | |
| --health-cmd pg_isready | |
| --health-interval 10s | |
| --health-timeout 5s | |
| --health-retries 5 | |
| ports: | |
| # Maps tcp port 5432 on service container to the host | |
| - 5432:5432 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ['3.7', '3.8', '3.9', '3.10'] | |
| env: | |
| PYTHON: ${{ matrix.python-version }} | |
| OS: ubuntu | |
| BALSAM_TEST_DB_URL: postgresql://postgres:postgres@localhost:5432/balsam-test | |
| PYTHONUNBUFFERED: 1 | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python env | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install mpich | |
| run: sudo apt-get update && sudo apt-get install -y -q libmpich-dev | |
| - name: Install Balsam | |
| run: | | |
| make install-dev | |
| pip freeze | |
| - name: tests | |
| run: make testcov | |
| - name: Archive test logs | |
| uses: actions/upload-artifact@v3 | |
| if: failure() | |
| with: | |
| name: test-logs | |
| path: pytest-logs/ | |
| - run: coverage xml | |
| - uses: codecov/codecov-action@v3.1.1 | |
| with: | |
| files: ./coverage.xml | |
| env_vars: PYTHON,OS |