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@YuLab-SMU

Bioinformatics Group @ SMU

Research group led by Prof. Guangchuang Yu in School of Basic Medical Sciences, Southern Medical University

长期招聘博士后,欢迎咨询。


Research Interest

Microecological Analysis and Intervention

Analysis and intervention of gut microecology in patients with polycystic ovary syndrome based on phage-bacteria-human host interaction (supported by the National Science Foundation of China, No. 32270677).

Bioinformaitcs tool development

The research group has developed a variety of widely recognized bioinformatics tools in the fields of biomedical knowledge mining and knowledge discovery (e.g., clusterProfiler), phylogenetic data integration and visualization (e.g., treeio and ggtree), metagenomic data analysis (e.g., MicrobiotaProcess) and data visualization (e.g., ggbreak), etc., to help biologists explore and understand data.

Links

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  1. clusterProfiler clusterProfiler Public

    📊 A universal enrichment tool for interpreting omics data

    R 1k 253

  2. ggtree ggtree Public

    🎄Visualization and annotation of phylogenetic trees

    R 834 173

  3. ChIPseeker ChIPseeker Public

    🎯 ChIP peak Annotation, Comparison and Visualization

    R 220 74

  4. MicrobiotaProcess MicrobiotaProcess Public

    🦠 A comprehensive R package for deep mining microbiome

    R 177 37

  5. ProjectYulab ProjectYulab Public

    ⏭️ Small coding tasks that enable you to participate in our development

    33 3

  6. plotbb plotbb Public

    🖌️ Grammar of Graphics for base plot

    R 52 7

Repositories

Showing 10 of 94 repositories
  • ggtangle Public

    Draw Network with Data

    YuLab-SMU/ggtangle’s past year of commit activity
    R 5 0 0 0 Updated Sep 18, 2024
  • ggflow Public

    Draw flow chart based on ggtree

    YuLab-SMU/ggflow’s past year of commit activity
    R 8 0 0 0 Updated Sep 18, 2024
  • yulab-smu.github.io Public

    🏠 Homepage for YuLab-SMU

    YuLab-SMU/yulab-smu.github.io’s past year of commit activity
    HTML 12 4 0 0 Updated Sep 16, 2024
  • ggtreeDendro Public

    Drawing 'dendrogram' using 'ggtree'

    YuLab-SMU/ggtreeDendro’s past year of commit activity
    R 12 3 0 0 Updated Sep 14, 2024
  • aplot Public

    Decorate a plot with associated information

    YuLab-SMU/aplot’s past year of commit activity
    R 97 14 9 0 Updated Sep 8, 2024
  • ggtreeSpace Public

    🕸️Exploring phylomorphospace using 'ggtree'

    YuLab-SMU/ggtreeSpace’s past year of commit activity
    R 5 2 0 0 Updated Sep 7, 2024
  • ggsc Public

    🧠 Visualizing Single Cell and Spatial Transcriptomics

    YuLab-SMU/ggsc’s past year of commit activity
    R 40 10 0 0 Updated Sep 6, 2024
  • enrichplot Public

    Visualization of Functional Enrichment Result

    YuLab-SMU/enrichplot’s past year of commit activity
    R 226 65 121 0 Updated Sep 4, 2024
  • SVP Public
    YuLab-SMU/SVP’s past year of commit activity
    R 5 GPL-3.0 0 0 0 Updated Sep 3, 2024
  • wget Public

    download files in R using wget -c

    YuLab-SMU/wget’s past year of commit activity
    R 17 3 0 0 Updated Aug 30, 2024

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