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Add export tsv #67

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Commits on Mar 20, 2023

  1. restructure dataframe from DLC and add events column. rename referenc… 

    …es to pose_estimation_model_str to model_str.
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    sfmig committed Mar 20, 2023
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  2. Move addition of video file column outside DLC df restructuring. Extr… 

    …act subset of frames just after DLC df reformatting. Add options for reading a multianimal DLC dataframe.
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    sfmig committed Mar 20, 2023
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  3. updated mypy in precommits

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    sfmig committed Mar 20, 2023
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  4. fix some mypy errors but still ignoring some types

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    sfmig committed Mar 20, 2023
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  5. added comments

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    sfmig committed Mar 20, 2023
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  6. add ROI to dataframe

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    sfmig committed Mar 20, 2023
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Commits on Mar 21, 2023

  1. add shapely to pyproject

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    sfmig committed Mar 21, 2023
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  2. rename roi_names for ROI_tags

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    sfmig committed Mar 21, 2023
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  3. reorder fields in sample metadata file with ROIs

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    sfmig committed Mar 21, 2023
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  4. insert video_file column after model_str

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    sfmig committed Mar 21, 2023
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  5. put ROI assignment in a separate function. add option for defining a … 

    …custom hierarchy of ROIs.
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    sfmig committed Mar 21, 2023
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  6. add custom ROI hierarchy option in project config

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    sfmig committed Mar 21, 2023
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  7. add option for buffer around the ROIs boundaries (not mandatory)

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    sfmig committed Mar 21, 2023
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  8. minor additions to docstring

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    sfmig committed Mar 21, 2023
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Commits on Mar 22, 2023

  1. add checklist with export options (default h5). add warning if no exp… 

    …ort option selected. print paths for exported files in new lines.
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    sfmig committed Mar 22, 2023
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