ORFFinder 1.0.1

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Installation

Download the ORFFinder.jar from the release page and run it using java.

java version 11+

Install the latest version of java, version 11 and above should run the program fine as of now. Tested with Java 11, 12.

using windows

Assuming java is correctly installed and set as the default program to open .jar files, a (double) click on ORFFinder.jar after navigating to its directory should launch the program.

using Linux

use java -jar ORFFinder.jar to launch the program

Usage

opening a fasta file

In the menubar, select file File then New ORF search. A filechooser should appear. Select the fastafile you want to find ORFs in and click save.

ORFs should now automatically be determined for each sequence (determined by > headers) in the fastafile

uploading ORFs

To save ORFs, select the ORFs and press UPLOAD.

Blasting ORFs

select orfs and press BLAST. Don't try selecting any other algorithm, they haven't been implemented