Add first datacube test

Open-EO · Dec 11, 2023 · ff2bb74 · ff2bb74
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diff --git a/tests/README.md b/tests/README.md
@@ -253,16 +253,20 @@ properties:
               const: true
 ```
 
+### External references
+
 Arguments and return values can point to external files, e.g.
+
 ```json
 {
-  "$ref": "https://host.example/file.nc"
+  "$ref": "https://host.example/datacube.json"
 }
 ```
 
-There are a couple of data types that can't be represented in JSON5 and will be provided as an object instead.
+### Labeled arrays
+
+Labeled arrays can't be represented in JSON5 and will be provided as an object instead.
 
-**Labeled arrays:**
 ```json
 {
   "type": "labeled-array",
@@ -280,29 +284,51 @@ There are a couple of data types that can't be represented in JSON5 and will be
 }
 ```
 
-**Data Cube Metadata:**
+### Datacubes
+
+Datacubes can't be represented in JSON5 and will be provided as an object instead.
+Vector datacubes are currently not supported.
+
 ```json
 {
   "type": "datacube",
-  "data": "./assets/example.nc",
-  "metadata": {
-    // uses the STAC datacube extension
-    "bands": {
-        "type": "bands",
-        "values": [
-          "B01",
-          "B02",
-          "B03"
-        ]
+  "data": [
+    // multi-dimensional array
+  ],
+  "nodata": [
+    NaN
+  ],
+  "dimensions": [
+    // similar to the STAC datacube extension
+    // properties: name, type, axis (if type = spatial), values, and reference_system (optional)
+    {
+      "name": "bands",
+      "type": "bands",
+      "values": ["blue","green","red","nir"]
+    },
+    {
+      "name": "t",
+      "type": "temporal",
+      "values": ["2020-06-01T00:00:00Z","2020-06-03T00:00:00Z","2020-06-06T00:00:00Z"]
+    },
+    {
+      "name": "y",
+      "type": "spatial",
+      "axis": "y",
+      "values": [5757495.0,5757485.0,5757475.0,5757465.0],
+      "reference_system": "EPSG:25832"
+    },
+    {
+      "name": "x",
+      "type": "spatial",
+      "axis": "x",
+      "values": [404835.0,404845.0,404855.0,404865.0,404875.0],
+      "reference_system": "EPSG:25832"
     }
-    // ...
-  }
+  ]
 }
 ```
 
-### Assets
-
-Additional assets will be provided for the test cases.
+### Nodata
 
-- Raster data cubes will be provided as CoverageJSON.
-- Multi-dimensional vector data cubes can't be provided right now, we use GeoJSON whenever possible.
+todo
diff --git a/tests/apply.json5 b/tests/apply.json5
@@ -1,4 +1,65 @@
 {
   "id": "apply",
-  "tests": []
-}
+  "tests": [
+    {
+      "required": [
+        "add"
+      ],
+      "arguments": {
+        "data": {
+          "$ref": "assets/xyt-minimal.json5"
+        },
+        "process": {
+          "process_graph": {
+            "add": {
+              "process_id": "add",
+              "arguments": {
+                "x": {
+                  "from_parameter": "x"
+                },
+                "y": 1
+              }
+            }
+          }
+        }
+      },
+      "returns": {
+        "type": "datacube",
+        "nodata": NaN,
+        "dimensions": [
+          {
+            "name": "t",
+            "type": "temporal",
+            "values": ["2020-06-01T00:00:00Z", "2020-06-03T00:00:00Z"]
+          },
+          {
+            "name": "y",
+            "type": "spatial",
+            "axis": "y",
+            "values": [5757495.0, 5757485.0, 5757475.0],
+            "reference_system": "EPSG:25832"
+          },
+          {
+            "name": "x",
+            "type": "spatial",
+            "axis": "x",
+            "values": [404835.0, 404845.0, 404855.0, 404865.0],
+            "reference_system": "EPSG:25832"
+          }
+        ],
+        "data": [
+          [
+            [18.5, 54.75, -26.1, -63.25],
+            [-17.0, 9.45, -2.11, -19.5],
+            [51.4, 50.24, 26.16, -80.6]
+          ],
+          [
+            [-62.65, 10.0, -67.52, -7.0],
+            [2.05, -62.8, 74.05, 52.05],
+            [49.86, -20.30, NaN, 47.15]
+          ]
+        ]
+      }
+    }
+  ]
+}
diff --git a/tests/assets/xyt-minimal.json5 b/tests/assets/xyt-minimal.json5
@@ -0,0 +1,37 @@
+{
+  "type": "datacube",
+  "nodata": NaN,
+  "dimensions": [
+    {
+      "name": "t",
+      "type": "temporal",
+      "values": ["2020-06-01T00:00:00Z", "2020-06-03T00:00:00Z"]
+    },
+    {
+      "name": "y",
+      "type": "spatial",
+      "axis": "y",
+      "values": [5757495.0, 5757485.0, 5757475.0],
+      "reference_system": "EPSG:25832"
+    },
+    {
+      "name": "x",
+      "type": "spatial",
+      "axis": "x",
+      "values": [404835.0, 404845.0, 404855.0, 404865.0],
+      "reference_system": "EPSG:25832"
+    }
+  ],
+  "data": [
+    [
+      [17.5, 53.75, -27.1, -64.25],
+      [-18.0, 8.45, -3.11, -20.5],
+      [50.4, 49.24, 25.16, -81.6]
+    ],
+    [
+      [-63.65, 9.0, -68.52, -8.0],
+      [1.05, -63.8, 73.05, 51.05],
+      [47.86, -21.30, NaN, 46.15]
+    ]
+  ]
+}
diff --git a/tests/assets/xytb-s2-small.json5 b/tests/assets/xytb-s2-small.json5
@@ -0,0 +1,30 @@
+{
+  "type": "datacube",
+  "dimensions": [
+    {
+      "name": "bands",
+      "type": "bands",
+      "values": ["blue", "green", "red", "nir"]
+    },
+    {
+      "name": "t",
+      "type": "temporal",
+      "values": ["2020-06-01T00:00:00Z", "2020-06-03T00:00:00Z", "2020-06-06T00:00:00Z", "2020-06-08T00:00:00Z", "2020-06-11T00:00:00Z", "2020-06-13T00:00:00Z"]
+    },
+    {
+      "name": "y",
+      "type": "spatial",
+      "axis": "y",
+      "values": [5757495.0, 5757485.0, 5757475.0, 5757465.0, 5757455.0, 5757445.0, 5757435.0, 5757425.0],
+      "reference_system": "EPSG:25832"
+    },
+    {
+      "name": "x",
+      "type": "spatial",
+      "axis": "x",
+      "values": [404835.0, 404845.0, 404855.0, 404865.0, 404875.0, 404885.0, 404895.0, 404905.0, 404915.0],
+      "reference_system": "EPSG:25832"
+    }
+  ],
+  "data": [[[[770.0, 780.0, 838.0, 1037.0, 1087.0, 1124.0, 1197.0, 1182.0, 1014.0], [860.0, 799.0, 778.0, 921.0, 1030.0, 1051.0, 1138.0, 1059.0, 1044.0], [1007.0, 815.0, 775.0, 793.0, 796.0, 795.0, 905.0, 1043.0, 1098.0], [956.0, 898.0, 782.0, 774.0, 774.0, 804.0, 831.0, 995.0, 1023.0], [882.0, 1105.0, 946.0, 760.0, 805.0, 839.0, 870.0, 951.0, 1010.0], [816.0, 964.0, 1132.0, 849.0, 798.0, 835.0, 980.0, 1012.0, 1015.0], [844.0, 864.0, 1079.0, 929.0, 804.0, 817.0, 1004.0, 1074.0, 1144.0], [832.0, 816.0, 893.0, 956.0, 807.0, 793.0, 875.0, 1106.0, 1200.0]], [[2049.0, 2006.0, 1990.0, 2006.0, 2005.0, 2000.0, 2015.0, 2015.0, 2027.0], [2041.0, 2013.0, 1979.0, 1969.0, 1965.0, 1979.0, 2025.0, 2032.0, 2012.0], [2005.0, 2009.0, 1979.0, 1950.0, 1963.0, 1988.0, 2021.0, 2049.0, 2051.0], [1997.0, 1999.0, 1996.0, 1976.0, 2021.0, 2026.0, 2055.0, 2087.0, 2088.0], [1970.0, 1990.0, 2025.0, 2027.0, 2039.0, 2057.0, 2090.0, 2094.0, 2115.0], [1964.0, 1971.0, 2044.0, 2107.0, 2094.0, 2099.0, 2135.0, 2155.0, 2159.0], [1963.0, 1977.0, 2059.0, 2132.0, 2137.0, 2146.0, 2181.0, 2203.0, 2182.0], [1980.0, 2029.0, 2067.0, 2156.0, 2175.0, 2183.0, 2189.0, 2196.0, 2187.0]], [[5465.0, 5864.0, 6180.0, 6379.0, 6360.0, 6253.0, 6205.0, 6092.0, 5834.0], [5736.0, 6040.0, 6264.0, 6261.0, 5995.0, 5545.0, 5389.0, 5386.0, 5362.0], [6038.0, 6265.0, 6324.0, 6016.0, 5738.0, 5521.0, 5135.0, 5033.0, 5271.0], [6145.0, 6245.0, 6098.0, 5732.0, 5519.0, 5519.0, 5318.0, 5147.0, 5228.0], [6038.0, 6009.0, 5828.0, 5558.0, 5466.0, 5475.0, 5387.0, 5290.0, 5325.0], [5941.0, 5853.0, 5749.0, 5564.0, 5459.0, 5419.0, 5371.0, 5397.0, 5483.0], [6133.0, 6008.0, 5841.0, 5643.0, 5475.0, 5368.0, 5388.0, 5503.0, 5623.0], [6117.0, 6058.0, 5913.0, 5668.0, 5476.0, 5480.0, 5644.0, 5799.0, 5815.0]], [[7200.0, 7226.0, 7254.0, 7246.0, 7317.0, 7301.0, 7279.0, 7274.0, 7232.0], [7258.0, 7253.0, 7294.0, 7303.0, 7281.0, 7292.0, 7320.0, 7246.0, 7258.0], [7227.0, 7228.0, 7319.0, 7288.0, 7258.0, 7270.0, 7282.0, 7253.0, 7285.0], [7199.0, 7212.0, 7227.0, 7206.0, 7194.0, 7154.0, 7185.0, 7166.0, 7191.0], [7115.0, 7170.0, 7170.0, 7128.0, 7115.0, 7085.0, 7013.0, 7027.0, 6978.0], [6976.0, 7094.0, 7109.0, 7097.0, 7080.0, 7002.0, 6936.0, 6909.0, 6806.0], [6944.0, 7036.0, 7025.0, 7033.0, 7036.0, 6967.0, 6905.0, 6821.0, 6726.0], [6994.0, 6988.0, 6988.0, 6923.0, 6923.0, 6926.0, 6907.0, 6836.0, 6702.0]], [[1787.0, 1764.0, 1717.0, 1714.0, 1785.0, 1908.0, 1998.0, 2100.0, 2609.0], [1798.0, 1602.0, 1560.0, 1561.0, 1690.0, 1840.0, 1930.0, 2128.0, 2702.0], [1697.0, 1560.0, 1484.0, 1523.0, 1646.0, 1757.0, 1789.0, 2045.0, 2553.0], [1440.0, 1509.0, 1504.0, 1615.0, 1655.0, 1698.0, 1730.0, 1998.0, 2444.0], [1287.0, 1428.0, 1596.0, 1645.0, 1576.0, 1587.0, 1761.0, 2310.0, 2563.0], [1310.0, 1376.0, 1586.0, 1594.0, 1516.0, 1414.0, 1719.0, 2359.0, 2543.0], [1371.0, 1439.0, 1505.0, 1435.0, 1335.0, 1305.0, 1827.0, 2532.0, 2633.0], [1324.0, 1459.0, 1385.0, 1285.0, 1176.0, 1264.0, 1809.0, 2724.0, 2918.0]], [[964.0, 961.0, 977.0, 1083.0, 1250.0, 1207.0, 1302.0, 1278.0, 1162.0], [1099.0, 1052.0, 961.0, 1006.0, 1114.0, 1102.0, 1227.0, 1185.0, 1275.0], [1129.0, 1085.0, 937.0, 962.0, 958.0, 950.0, 1054.0, 1202.0, 1235.0], [993.0, 1116.0, 1020.0, 977.0, 969.0, 983.0, 1012.0, 1104.0, 1179.0], [983.0, 1106.0, 1215.0, 980.0, 983.0, 1006.0, 1049.0, 1126.0, 1186.0], [979.0, 998.0, 1188.0, 1128.0, 967.0, 986.0, 1090.0, 1187.0, 1177.0], [994.0, 974.0, 1064.0, 1170.0, 1003.0, 965.0, 1064.0, 1191.0, 1261.0], [956.0, 959.0, 989.0, 1083.0, 1033.0, 981.0, 980.0, 1118.0, 1246.0]]], [[[620.0, 687.0, 774.0, 971.0, 983.0, 1030.0, 1071.0, 1023.0, 985.0], [817.0, 677.0, 687.0, 806.0, 886.0, 850.0, 962.0, 935.0, 924.0], [958.0, 705.0, 650.0, 636.0, 627.0, 591.0, 795.0, 885.0, 906.0], [791.0, 929.0, 736.0, 659.0, 635.0, 675.0, 797.0, 837.0, 835.0], [758.0, 1101.0, 877.0, 686.0, 704.0, 823.0, 915.0, 830.0, 808.0], [689.0, 956.0, 1064.0, 710.0, 739.0, 773.0, 898.0, 937.0, 840.0], [753.0, 807.0, 1065.0, 921.0, 709.0, 687.0, 895.0, 1049.0, 954.0], [697.0, 703.0, 814.0, 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