Integration testing #416
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| name: Integration testing | |
| on: | |
| workflow_dispatch: | |
| jobs: | |
| test_modflow: | |
| name: MODFLOW 6 integration tests | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ ubuntu-22.04, macos-13, macos-14, windows-2019 ] | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - name: Checkout repo | |
| uses: actions/checkout@v4 | |
| with: | |
| path: executables | |
| - name: Checkout modflow6 | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: MODFLOW-USGS/modflow6 | |
| path: modflow6 | |
| - name: Setup Micromamba | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-file: modflow6/environment.yml | |
| cache-environment: true | |
| cache-downloads: true | |
| init-shell: bash | |
| - name: Setup ${{ contains(fromJSON('["macos-14"]'), matrix.os) && 'gcc' || 'intel-classic' }} ${{ contains(fromJSON('["macos-14"]'), matrix.os) && 12 || 2021.7 }} | |
| uses: fortran-lang/setup-fortran@v1 | |
| with: | |
| compiler: ${{ contains(fromJSON('["macos-14"]'), matrix.os) && 'gcc' || 'intel-classic' }} | |
| version: ${{ contains(fromJSON('["macos-14"]'), matrix.os) && 12 || 2021.7 }} | |
| - name: Set LDFLAGS (macOS) | |
| if: matrix.os == 'macos-14' | |
| run: | | |
| os_ver=$(sw_vers -productVersion | cut -d'.' -f1) | |
| if (( "$os_ver" > 12 )); then | |
| ldflags="$LDFLAGS -Wl,-ld_classic" | |
| echo "LDFLAGS=$ldflags" >> $GITHUB_ENV | |
| fi | |
| - name: Hide dylibs (macOS) | |
| if: matrix.os == 'macos-14' | |
| run: | | |
| version="12" | |
| libpath="/opt/homebrew/opt/gcc@$version/lib/gcc/$version" | |
| mv $libpath/libgfortran.5.dylib $libpath/libgfortran.5.dylib.bak | |
| mv $libpath/libquadmath.0.dylib $libpath/libquadmath.0.dylib.bak | |
| mv $libpath/libstdc++.6.dylib $libpath/libstdc++.6.dylib.bak | |
| # only necessary because we need mf5to6 for mf6 autotests | |
| - name: Build modflow6 | |
| working-directory: modflow6 | |
| run: | | |
| setupargs="--prefix=$(pwd) --libdir=bin -Ddebug=false" | |
| if [[ "${{ matrix.os }}" == "macos-14" ]]; then | |
| setupargs="$setupargs -Doptimization=1" | |
| fi | |
| meson setup builddir $setupargs | |
| meson install -C builddir | |
| - name: Get OS tag | |
| id: ostag | |
| run: | | |
| ostag=$(python -c "from modflow_devtools.ostags import get_ostag; print(get_ostag())") | |
| echo "ostag=$ostag" >> $GITHUB_OUTPUT | |
| - name: Build programs | |
| uses: nick-fields/retry@v3 | |
| with: | |
| shell: bash | |
| timeout_minutes: 40 | |
| command: | | |
| ostag="${{ steps.ostag.outputs.ostag }}" | |
| mkdir $ostag | |
| make-program : --appdir $ostag --zip $ostag.zip --verbose | |
| make-program mf2005,mflgr,mfnwt,mfusg --appdir $ostag --double --keep --zip $ostag.zip --verbose | |
| if [[ "${{ matrix.os }}" == "macos-14" ]]; then | |
| make-program mf6 --appdir $ostag --keep --zip $ostag.zip --verbose --fflags='-O1' | |
| fi | |
| make-code-json --appdir $ostag --zip $ostag.zip --verbose | |
| - name: Move programs | |
| run: | | |
| # build programs | |
| ostag="${{ steps.ostag.outputs.ostag }}" | |
| # move programs where mf6 autotests expect them | |
| mkdir modflow6/bin/downloaded | |
| cp $ostag/* modflow6/bin/downloaded | |
| # move mf6 binaries to top-level bindir in mf6 repo | |
| if [[ "$RUNNER_OS" == "Windows" ]]; then | |
| eext=".exe" | |
| oext=".dll" | |
| elif [[ "$RUNNER_OS" == "Linux" ]]; then | |
| eext="" | |
| oext=".so" | |
| else | |
| eext="" | |
| oext=".dylib" | |
| fi | |
| cp "$ostag/mf6$eext" modflow6/bin | |
| cp "$ostag/libmf6$oext" modflow6/bin | |
| cp "$ostag/zbud6$eext" modflow6/bin | |
| # set execute permissions | |
| if [[ "$RUNNER_OS" != "Windows" ]]; then | |
| sudo chmod +x modflow6/bin/* | |
| sudo chmod +x modflow6/bin/downloaded/* | |
| fi | |
| - name: Check linked libs (macOS) | |
| if: matrix.os == 'macos-14' | |
| run: | | |
| ostag="${{ steps.ostag.outputs.ostag }}" | |
| find $ostag -perm +111 -type f | xargs -I{} sh -c "otool -L {}" | |
| - name: Upload programs | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: ${{ steps.ostag.outputs.ostag }} | |
| path: ${{ steps.ostag.outputs.ostag }}.zip | |
| - name: Upload metadata | |
| if: runner.os == 'Linux' | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: ${{ steps.ostag.outputs.ostag }} | |
| path: | | |
| ./code.json | |
| ./code.md | |
| - name: Test modflow6 | |
| working-directory: modflow6/autotest | |
| run: | | |
| python update_flopy.py | |
| # when mf6.5.0 is released with new models and exes dist is updatd, remove filters below | |
| pytest -v -n auto -k "not gwe and not swf and not prt" -m "not developmode" --durations 0 |