R version of K regulation model used for Morris Method analysis. This code was used for Stadt & Layton, A mathematical model of whole-body potassium regulation: Global parameter sensitivity analysis, preprint
These are the main driver files to compute simulation results and the Morris Method analysis driver_singlemeals.r Runs a baseline simulation for each of the single meal experiments (Meal + KCl, Meal Only, KCl Only).
runODEMorris_MealKCl.r Runs Morris method analysis for the Meal + KCl experiments.
runODEMorris_MealOnly.r Runs Morris method analysis for Meal Only experiments
runODEMorris_KClOnly.r Runs Morris method analysis for KCl Only experiments
runMorris_SS.r Runs Morris method analysis for steady state results
Saved results from the simulations and global sensitivity analysis in this folder. Use convert_MorrisResults.r and convert_MorrisSS.r to convert .RData results files into .csv for plotting.
Scripts for making figures from the results
manu_figs/ Copy of figures for manuscript
results_final/ simulation and Morris analysis results used for plotting
plot_MealSims.m plot simulation results for the 3 single meal simulation types (Meal Only, KCl Only, Meal + KCl)
plot_MI_allmeal.m plot Morris Indices for all 3 single meal simulation types
plot_MorrisSS.m plot Morris analysis results for steady state
plot_Morris_KClOnly.m plot Morris analysis results for KCl Only simulations
plot_Morris_MealOnly.m plot Morris analysis results for Meal Only simulations
plot_Morris_MealKCl.m plot Morris analysis results for Meal + KCl simulations