bug fix: retrieve sequence string for transfer

JBEI · Nov 11, 2020 · 8858543 · 8858543
1 parent ff33207
commit 8858543
Showing 1 changed file with 8 additions and 2 deletions.
diff --git a/src/main/java/org/jbei/ice/lib/net/RemoteTransfer.java b/src/main/java/org/jbei/ice/lib/net/RemoteTransfer.java
@@ -16,6 +16,8 @@
 import org.jbei.ice.storage.model.Entry;
 import org.jbei.ice.storage.model.RemotePartner;
 
+import java.io.IOException;
+import java.nio.charset.StandardCharsets;
 import java.util.*;
 import java.util.stream.Collectors;
 
@@ -195,8 +197,12 @@ protected void performTransfer(RemotePartner partner, PartData data) {
         if (sequenceDAO.hasSequence(data.getId())) {
             InputStreamWrapper wrapper = new SequenceAsString(SequenceFormat.GENBANK, data.getId(), true).get();
             if (wrapper != null && wrapper.getInputStream() != null) {
-                String sequenceString = wrapper.getInputStream().toString();
-                remoteContact.transferSequence(url, data.getRecordId(), data.getType(), sequenceString);
+                try {
+                    String sequenceString = new String(wrapper.getInputStream().readAllBytes(), StandardCharsets.UTF_8);
+                    remoteContact.transferSequence(url, data.getRecordId(), data.getType(), sequenceString);
+                } catch (IOException e) {
+                    Logger.error("Cannot transfer sequence", e);
+                }
             }
         }