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Eichler Lab

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  1. pav pav Public

    Phased assembly variant caller

    Python 88 7

  2. smrtsv2 smrtsv2 Public

    Structural variant caller

    Python 53 6

  3. pacbio_variant_caller pacbio_variant_caller Public archive

    SMRT-SV: Structural variant and indel caller for PacBio reads

    Python 28 15

  4. svpop svpop Public

    Variant annotation and merging pipeline

    Python 27 6

  5. vcf-flow vcf-flow Public

    Forked from huddlej/tab-to-vcf

    Convert tab-delimited file into a VCF

    Python 8 2

  6. chm1_scripts chm1_scripts Public

    Python 8 5

Repositories

Showing 10 of 77 repositories
  • basecall_dorado Public

    Snakemake repository for basecalling with dorado

    EichlerLab/basecall_dorado’s past year of commit activity
    Python 0 0 0 0 Updated Sep 19, 2024
  • pav Public

    Phased assembly variant caller

    EichlerLab/pav’s past year of commit activity
    Python 88 7 7 0 Updated Sep 16, 2024
  • compteam_tools Public

    A collection of custom scripts for everyday long read analysis

    EichlerLab/compteam_tools’s past year of commit activity
    Python 0 1 0 0 Updated Sep 10, 2024
  • assembly_qc Public Forked from youngjun0827/assembly_qc

    assembly QC pipeline starts with foreign contamination screening

    EichlerLab/assembly_qc’s past year of commit activity
    Python 0 1 0 0 Updated Sep 9, 2024
  • svpop Public

    Variant annotation and merging pipeline

    EichlerLab/svpop’s past year of commit activity
    Python 27 6 6 0 Updated Aug 23, 2024
  • AoU_WDL Public

    Repository for storing WDL workflows for execution in the AoU Researcher Workbench

    EichlerLab/AoU_WDL’s past year of commit activity
    WDL 0 1 0 0 Updated Aug 21, 2024
  • snakemake_pipelines Public

    General Snakemake pipelines.

    EichlerLab/snakemake_pipelines’s past year of commit activity
    Python 0 0 0 0 Updated Aug 15, 2024
  • hifiasm-smk Public

    Snakemake software repo for hifiasm

    EichlerLab/hifiasm-smk’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Aug 13, 2024
  • docker_hub Public

    Repository for Testing Automatic Builds with Docker Hub

    EichlerLab/docker_hub’s past year of commit activity
    Dockerfile 1 1 0 0 Updated Aug 9, 2024
  • align_all Public

    A general read-alignment pipeline for PacBioHiFi, ONT, and Illumina data.

    EichlerLab/align_all’s past year of commit activity
    Python 0 0 0 0 Updated Aug 1, 2024
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