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Updated MRO, new RO import module, added version IRIs, RO changes doc…
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…ument.
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Mark Jensen committed May 30, 2019
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3 changes: 2 additions & 1 deletion .gitignore
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catalog-v001.xml
\results
\mro
\build
*.py
8 changes: 4 additions & 4 deletions AgentOntology.ttl
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@prefix : <http://www.ontologyrepository.com/CommonCoreOntologies/Mid/AgentOntology/> .
@prefix dc: <http://purl.org/dc/elements/1.1/> .
@prefix cco: <http://www.ontologyrepository.com/CommonCoreOntologies/> .
@prefix obo: <http://purl.obolibrary.org/obo/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix xml: <http://www.w3.org/XML/1998/namespace> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix foaf: <http://xmlns.com/foaf/0.1/> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@base <http://www.ontologyrepository.com/CommonCoreOntologies/Mid/AgentOntology> .

<http://www.ontologyrepository.com/CommonCoreOntologies/Mid/AgentOntology> rdf:type owl:Ontology ;
owl:versionIRI <http://www.ontologyrepository.com/CommonCoreOntologies/Mid/2019-05-02/AgentOntology> ;
owl:imports <http://www.ontologyrepository.com/CommonCoreOntologies/Mid/InformationEntityOntology> ;
cco:code_license "The 3-Clause BSD License: https://opensource.org/licenses/BSD-3-Clause"^^xsd:string ;
cco:content_license "The Creative Commons BY 3.0 License: https://creativecommons.org/licenses/by/3.0/"^^xsd:string ;
cco:copyright "COPYRIGHT © 2015-2019 CUBRC, Inc."^^xsd:string ;
rdfs:comment "This ontology is designed to represent agents, especially persons and organizations, and their roles."^^xsd:string ;
rdfs:label "Agent Ontology"^^xsd:string ;
owl:versionInfo "April 4, 2019"^^xsd:string ,
owl:versionInfo "May 2, 2019"^^xsd:string ,
"Version 1.1.2"^^xsd:string .

#################################################################
# Object Properties
#################################################################
Expand Down Expand Up @@ -1842,4 +1842,4 @@ cco:UnalliedPerson rdf:type owl:Class ;
rdfs:label "Neutral"^^xsd:string .


### Generated by the OWL API (version 4.5.9.2019-02-01T07:24:44Z) https://github.com/owlcs/owlapi
### Generated by the OWL API (version 4.5.6) https://github.com/owlcs/owlapi
6 changes: 4 additions & 2 deletions AllCoreOntology.ttl
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@prefix : <http://www.ontologyrepository.com/CommonCoreOntologies/Mid/AllCoreOntology/> .
@prefix cco: <http://www.ontologyrepository.com/CommonCoreOntologies/> .
@prefix obo: <http://purl.obolibrary.org/obo/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix xml: <http://www.w3.org/XML/1998/namespace> .
Expand All @@ -8,6 +9,7 @@
@base <http://www.ontologyrepository.com/CommonCoreOntologies/Mid/AllCoreOntology> .

<http://www.ontologyrepository.com/CommonCoreOntologies/Mid/AllCoreOntology> rdf:type owl:Ontology ;
owl:versionIRI <http://www.ontologyrepository.com/CommonCoreOntologies/Mid/2019-05-02/AllCoreOntology> ;
owl:imports <http://www.ontologyrepository.com/CommonCoreOntologies/Mid/AgentOntology> ,
<http://www.ontologyrepository.com/CommonCoreOntologies/Mid/ArtifactOntology> ,
<http://www.ontologyrepository.com/CommonCoreOntologies/Mid/EventOntology> ,
Expand All @@ -16,7 +18,7 @@
cco:copyright "COPYRIGHT © 2015-2019 CUBRC, Inc."^^xsd:string ;
rdfs:comment "An import of all the Common Core mid-level ontologies into a single file so that content is easy to view. The All Core Ontology is not an ontology in the sense it contains no unique content. As such it should not be added to, but can be extended from."^^xsd:string ;
rdfs:label "All Core Ontology"^^xsd:string ;
owl:versionInfo "April 4, 2019"^^xsd:string ,
owl:versionInfo "May 2, 2019"^^xsd:string ,
"Version 1.1.2"^^xsd:string .

### Generated by the OWL API (version 4.5.9.2019-02-01T07:24:44Z) https://github.com/owlcs/owlapi
### Generated by the OWL API (version 4.5.6) https://github.com/owlcs/owlapi
8 changes: 3 additions & 5 deletions ArtifactOntology.ttl
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@prefix : <http://www.ontologyrepository.com/CommonCoreOntologies/Mid/ArtifactOntology/> .
@prefix dc: <http://purl.org/dc/elements/1.1/> .
@prefix bfo: <http://purl.obolibrary.org/obo#> .
@prefix cco: <http://www.ontologyrepository.com/CommonCoreOntologies/> .
@prefix obo: <http://purl.obolibrary.org/obo/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix xml: <http://www.w3.org/XML/1998/namespace> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix foaf: <http://xmlns.com/foaf/0.1/> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@base <http://www.ontologyrepository.com/CommonCoreOntologies/Mid/ArtifactOntology> .

<http://www.ontologyrepository.com/CommonCoreOntologies/Mid/ArtifactOntology> rdf:type owl:Ontology ;
owl:versionIRI <http://www.ontologyrepository.com/CommonCoreOntologies/Mid/2019-05-02/ArtifactOntology> ;
owl:imports <http://www.ontologyrepository.com/CommonCoreOntologies/Mid/InformationEntityOntology> ;
cco:code_license "The 3-Clause BSD License: https://opensource.org/licenses/BSD-3-Clause"^^xsd:string ;
cco:content_license "The Creative Commons BY 3.0 License: https://creativecommons.org/licenses/by/3.0/"^^xsd:string ;
cco:copyright "COPYRIGHT © 2015-2019 CUBRC, Inc."^^xsd:string ;
rdfs:comment "This ontology is designed to represent artifacts that are common to multiple domains along with their models, specifications, and functions."^^xsd:string ;
rdfs:label "Artifact Ontology"^^xsd:string ;
owl:versionInfo "April 4, 2019"^^xsd:string ,
owl:versionInfo "May 2, 2019"^^xsd:string ,
"Version 1.1.1"^^xsd:string .

#################################################################
Expand Down Expand Up @@ -5823,4 +5821,4 @@ cco:XRayTelescope rdf:type owl:Class ;
rdfs:label "X-ray Telescope"^^xsd:string .


### Generated by the OWL API (version 4.5.9.2019-02-01T07:24:44Z) https://github.com/owlcs/owlapi
### Generated by the OWL API (version 4.5.6) https://github.com/owlcs/owlapi
13 changes: 6 additions & 7 deletions CurrencyUnitOntology.ttl
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@prefix : <http://www.ontologyrepository.com/CommonCoreOntologies/Mid/CurrencyUnitOntology/> .
@prefix dc: <http://purl.org/dc/elements/1.1/> .
@prefix cco: <http://www.ontologyrepository.com/CommonCoreOntologies/> .
@prefix obo: <http://purl.obolibrary.org/obo/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix xml: <http://www.w3.org/XML/1998/namespace> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix foaf: <http://xmlns.com/foaf/0.1/> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@base <http://www.ontologyrepository.com/CommonCoreOntologies/Mid/CurrencyUnitOntology> .

<http://www.ontologyrepository.com/CommonCoreOntologies/Mid/CurrencyUnitOntology> rdf:type owl:Ontology ;
owl:versionIRI <http://www.ontologyrepository.com/CommonCoreOntologies/Mid/2019-05-02/CurrencyUnitOntology> ;
owl:imports <http://www.ontologyrepository.com/CommonCoreOntologies/Mid/InformationEntityOntology> ;
rdfs:comment "This ontology is designed to represent currencies that are issued and used by countries."^^xsd:string ;
cco:code_license "The 3-Clause BSD License: https://opensource.org/licenses/BSD-3-Clause"^^xsd:string ;
cco:content_license "The Creative Commons BY 3.0 License: https://creativecommons.org/licenses/by/3.0/"^^xsd:string ;
owl:versionInfo "April 4, 2019"^^xsd:string ,
"Version 1.1.1"^^xsd:string ;
cco:copyright "COPYRIGHT © 2015-2019 CUBRC, Inc."^^xsd:string ;
rdfs:label "Currency Unit Ontology"^^xsd:string .
rdfs:comment "This ontology is designed to represent currencies that are issued and used by countries."^^xsd:string ;
rdfs:label "Currency Unit Ontology"^^xsd:string ;
owl:versionInfo "May 2, 2019"^^xsd:string ,
"Version 1.1.1"^^xsd:string .

#################################################################
# Classes
Expand Down Expand Up @@ -933,4 +932,4 @@ cco:ZambiaKwacha rdf:type owl:NamedIndividual ,
rdfs:label "Zambia Kwacha"^^xsd:string .


### Generated by the OWL API (version 4.2.8.20170104-2310) https://github.com/owlcs/owlapi
### Generated by the OWL API (version 4.5.6) https://github.com/owlcs/owlapi
7 changes: 3 additions & 4 deletions EventOntology.ttl
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@@ -1,23 +1,22 @@
@prefix : <http://www.ontologyrepository.com/CommonCoreOntologies/Mid/EventOntology/> .
@prefix dc: <http://purl.org/dc/elements/1.1/> .
@prefix cco: <http://www.ontologyrepository.com/CommonCoreOntologies/> .
@prefix obo: <http://purl.obolibrary.org/obo/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix xml: <http://www.w3.org/XML/1998/namespace> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix foaf: <http://xmlns.com/foaf/0.1/> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@base <http://www.ontologyrepository.com/CommonCoreOntologies/Mid/EventOntology> .

<http://www.ontologyrepository.com/CommonCoreOntologies/Mid/EventOntology> rdf:type owl:Ontology ;
owl:versionIRI <http://www.ontologyrepository.com/CommonCoreOntologies/Mid/2019-05-02/EventOntology> ;
owl:imports <http://www.ontologyrepository.com/CommonCoreOntologies/Mid/InformationEntityOntology> ;
cco:code_license "The 3-Clause BSD License: https://opensource.org/licenses/BSD-3-Clause"^^xsd:string ;
cco:content_license "The Creative Commons BY 3.0 License: https://creativecommons.org/licenses/by/3.0/"^^xsd:string ;
cco:copyright "COPYRIGHT © 2015-2019 CUBRC, Inc."^^xsd:string ;
rdfs:comment "This ontology is designed to represent processual entities, especially those performed by agents, that occur within multiple domains."^^xsd:string ;
rdfs:label "Event Ontology"^^xsd:string ;
owl:versionInfo "April 4, 2019"^^xsd:string ,
owl:versionInfo "May 2, 2019"^^xsd:string ,
"Version 1.1.1"^^xsd:string .

#################################################################
Expand Down Expand Up @@ -3056,4 +3055,4 @@ cco:XrayFrequency rdf:type owl:Class ;
rdfs:label "X-ray Frequency"^^xsd:string .


### Generated by the OWL API (version 4.5.9.2019-02-01T07:24:44Z) https://github.com/owlcs/owlapi
### Generated by the OWL API (version 4.5.6) https://github.com/owlcs/owlapi
27 changes: 7 additions & 20 deletions ExtendedRelationOntology.ttl
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@@ -1,25 +1,24 @@
@prefix : <http://www.ontologyrepository.com/CommonCoreOntologies/Mid/ExtendedRelationOntology/> .
@prefix dc: <http://purl.org/dc/elements/1.1/> .
@prefix cco: <http://www.ontologyrepository.com/CommonCoreOntologies/> .
@prefix obo: <http://purl.obolibrary.org/obo/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix xml: <http://www.w3.org/XML/1998/namespace> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix foaf: <http://xmlns.com/foaf/0.1/> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@base <http://www.ontologyrepository.com/CommonCoreOntologies/Mid/ExtendedRelationOntology> .

<http://www.ontologyrepository.com/CommonCoreOntologies/Mid/ExtendedRelationOntology> rdf:type owl:Ontology ;
owl:versionIRI <http://www.ontologyrepository.com/CommonCoreOntologies/Mid/2019-05-02/ExtendedRelationOntology> ;
owl:imports obo:bfo.owl ,
cco:cco-ro-import.owl ;
<http://www.ontologyrepository.com/CommonCoreOntologies/Upper/ROImport> ;
cco:code_license "The 3-Clause BSD License: https://opensource.org/licenses/BSD-3-Clause"^^xsd:string ;
cco:content_license "The Creative Commons BY 3.0 License: https://creativecommons.org/licenses/by/3.0/"^^xsd:string ;
cco:copyright "COPYRIGHT © 2015-2019 CUBRC, Inc."^^xsd:string ;
rdfs:comment "This ontology is designed to represent many of the relations (i.e. object properties) that hold between entities at the level of the mid-level Common Core Ontologies."^^xsd:string ;
rdfs:label "Extended Relation Ontology"^^xsd:string ;
owl:versionInfo "April 4, 2019"^^xsd:string ,
"Version 1.1.1"^^xsd:string .
owl:versionInfo "May 2, 2019"^^xsd:string ,
"Version 1.1.1"^^xsd:string .

#################################################################
# Annotation properties
Expand Down Expand Up @@ -394,13 +393,6 @@ cco:has_process_part rdf:type owl:ObjectProperty ;
rdfs:label "has process part"^^xsd:string .


### http://www.ontologyrepository.com/CommonCoreOntologies/has_proper_part
cco:has_proper_part rdf:type owl:ObjectProperty ;
cco:definition "TO DO"^^xsd:string ;
cco:is_curated_in_ontology "http://www.ontologyrepository.com/CommonCoreOntologies/Mid/ExtendedRelationOntology"^^xsd:string ;
rdfs:label "has proper part"^^xsd:string .


### http://www.ontologyrepository.com/CommonCoreOntologies/inheres_in_aggregate
cco:inheres_in_aggregate rdf:type owl:ObjectProperty ;
rdfs:domain [ rdf:type owl:Class ;
Expand Down Expand Up @@ -503,6 +495,7 @@ cco:is_predecessor_of rdf:type owl:ObjectProperty ;

### http://www.ontologyrepository.com/CommonCoreOntologies/is_site_of
cco:is_site_of rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf obo:BFO_0000067 ;
owl:inverseOf cco:occurs_at ;
rdfs:domain [ rdf:type owl:Class ;
owl:unionOf ( obo:BFO_0000006
Expand Down Expand Up @@ -536,6 +529,7 @@ cco:is_temporal_region_of rdf:type owl:ObjectProperty ;

### http://www.ontologyrepository.com/CommonCoreOntologies/occurs_at
cco:occurs_at rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf obo:BFO_0000066 ;
rdfs:domain obo:BFO_0000015 ;
rdfs:range [ rdf:type owl:Class ;
owl:unionOf ( obo:BFO_0000006
Expand All @@ -556,13 +550,6 @@ cco:occurs_on rdf:type owl:ObjectProperty ;
rdfs:label "occurs on"^^xsd:string .


### http://www.ontologyrepository.com/CommonCoreOntologies/proper_part_of
cco:proper_part_of rdf:type owl:ObjectProperty ;
cco:definition "TO DO"^^xsd:string ;
cco:is_curated_in_ontology "http://www.ontologyrepository.com/CommonCoreOntologies/Mid/ExtendedRelationOntology"^^xsd:string ;
rdfs:label "proper part of"^^xsd:string .


### http://www.ontologyrepository.com/CommonCoreOntologies/quality_of_aggregate
cco:quality_of_aggregate rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf cco:inheres_in_aggregate ;
Expand All @@ -583,4 +570,4 @@ cco:role_of_aggregate rdf:type owl:ObjectProperty ;
rdfs:label "role of aggregate"^^xsd:string .


### Generated by the OWL API (version 4.5.9.2019-02-01T07:24:44Z) https://github.com/owlcs/owlapi
### Generated by the OWL API (version 4.5.6) https://github.com/owlcs/owlapi
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1 comment on commit 21c54e7

@mark-jensen
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Closes #23, #38.

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