Note: As of 16 October 2021, this repository has been archived. Generalized versions of its data processing and analysis modules have been split in two and migrated to a correlates data processing workflow and a correlates of risk and protection analysis workflow. This archive serves as a reference of the workflows used in developing reports for the immune correlates analyses of the Moderna and Janssen (ENSEMBLE) COVID-19 vaccine efficacy trials.
The Statistical Analysis Plan is available
Please consult this blog post, which outlines most aspects of our project organization recommendations.
- Code style guide, with some modifications;
this will largely be enforcd with
styler. - Project organization: mostly independent subdirectories, each incorporating
herefor path resolution. - Package version control and virtual environments using
renv. - Code review procedure: see our contribution guidelines.
When citing the analysis workflow or analytic results produced by its use,
please use the following BibTeX entry or equivalent:
@software{gilbert2021usgcove,
author = {Gilbert, Peter B and Fong, Youyi and Benkeser, David and
Hejazi, Nima S and Hughes, Ellis and Borate, Bhavesh and Yu,
Chenchen and Lu, Yiwen and Li, Kendrick Q and {van der Laan}, Lars
WP and Simpkins, Brian},
title = {{COVID-19 Prevention Network Immune Correlates Analyses},
year = {2021},
doi = {10.5281/zenodo.5593129},
url = {https://github.com/CoVPN/correlates_reporting_usgcove_archive}
}
The contents of this repository are distributed under the GPL-3 license. See
file LICENSE.md
for details.