aind-behavior-core-analysis

A repository with core primitives for analysis shared across all Aind.Behavior tasks

This repository is part of a bigger infrastructure that is summarized here.

Installing and Upgrading

if you choose to clone the repository, you can install the package by running the following command from the root directory of the repository:

pip install .

Otherwise, you can use pip:

pip install aind-behavior-core-analysis@https://github.com/AllenNeuralDynamics/Aind.Behavior.CoreAnalysis

Contributing

If you would like to contribute to this repository, open an Issue and/or Pull Request on this repository.

Linters and testing

• Install the provided linting and testing tools in the project.toml.

Tests

To run tests locally, run the following command from the root directory of the repository:

python -m unittest

Linters

• Use flake8 to check that code is up to standards (no unused imports, etc.):

flake8 .

• Use black to automatically format the code into PEP standards:

black .

• Use isort to automatically sort import statements:

isort .