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SNPRelate cannot find variant.id from SeqArray object #76

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yangli-ai opened this issue Dec 17, 2020 · 2 comments
Open

SNPRelate cannot find variant.id from SeqArray object #76

yangli-ai opened this issue Dec 17, 2020 · 2 comments

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@yangli-ai
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In SeqArray object, this is variant.id. When SNPRelate::snpgdsSummary( ) opens SeqArray object, it gives error: Error in index.gdsn(gds, "snp.id") : No such GDS node "snp.id"!.

How to link snp.id to variant.id in SNPRelate?
@zhengxwen
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Please use seqSummary() in the SeqArray package instead.

@yangli-ai
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Thanks.

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@yangli-ai @zhengxwen