base version without Rstudio

[che25]

I yufree,

your docker image works really well and I am very grateful to you for putting it together.

I have this issue: I would like to set up a workflow with minimal user interaction and run it via singularity on the server. The whole RStudio frontend is not required for this. I could not find the Dockerfile with which you generated your base image otherwise I might have attempted to edit it. But could you provide me with a version that is more like the r-base version (i.e. no Rstudio, no shiny, etc) on which I could build, or your base Dockerfile?

Many thanks

[yufree]

You can change the base image to FROM rocker/r-base for this Dockerfile and add other packages in this Dockerfile. I used FROM rocker/verse as my base image and you might need to add some dependence for rocker/r-base to install other packages.

[che25]

Is it the docker file in xcmsrocker/CBverse_xcms/Dockerfile?

…

On 20 Sep 2021, at 16:20, Miao YU ***@***.***> wrote: You can change the base image to FROM rocker/r-base for this Dockerfile <https://github.com/yufree/xcmsrocker/blob/master/CBverse_xcms/Dockerfile> and add other packages in this Dockerfile <https://github.com/yufree/xcmsrocker/blob/master/verse_xcms/Dockerfile>. I used FROM rocker/rstudio as my base image and you might need to add some dependence for rocker/r-base to install other packages. — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub <#1 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ACCKVXHPUNCGEDDCJSWVVB3UC47MLANCNFSM5ELJKCIQ>. Triage notifications on the go with GitHub Mobile for iOS <https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675> or Android <https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub>.

[yufree]

Yes.