This repository contains the code used in the Master's Thesis "Transcriptomic keys of aging" from the Master's Degree in Biomedicine and Molecular Oncology from the University of Oviedo
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Updated
Jul 14, 2024 - R
This repository contains the code used in the Master's Thesis "Transcriptomic keys of aging" from the Master's Degree in Biomedicine and Molecular Oncology from the University of Oviedo
Map TIR-pHMM models to genomic sequences for annotation of MITES and complete DNA-Transposons.
Pipeline to detect transposable elements (TEs) insertions polymorphism
Tool to find mge (phages, plasmids, and transposons) in cdiff. Scripts that allow Clostyper to be run in slurm.
Supporting repository for article "Software Evaluation for 'de novo' Detection of Transposons"
Scan genomes for internally repeated sequences, elements which are repetitive in another species, or high-identity HGT candidate regions between species.
Analysis and selection of primers for the study of transposable elements.
A Python3 library for transposon fingerprinting
Bi-allelic genotyping of reference transposable elements
Detect elevations and gaps in read coverage on metagenome contigs or assembled genomes
Bioinformatics project
De novo repeat inference from long reads
SLURM-ready bash scripts to run the complete REPET pipeline
An R/C++ package for simulating the evolution of retrotransposons over time.
Methods for genome paper
Bioinformatic analysis of RNA-Seq, WGBS, and Hi-C in Arabidopsis
Library-free horizontal transfer detection, with a focus on transposable element invasions
Transposable Element Finder - Detection of active transposable elements from NGS data
rMETL - realignment-based Mobile Element insertion detection Tool for Long read
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