Tool for quick and standardized annotation of single cell transcriptomics data
-
Updated
Oct 2, 2024 - Python
Tool for quick and standardized annotation of single cell transcriptomics data
Seismic R package. Discover cell type-trait associations in minutes for GWAS and single-cell RNA-sequencing data
A course on genomics and bioinformatics from WU
Gotta keep the brain empty to learn more. This is my easily digestible backup.
SGS, is a user-friendly, collaborative and versatile browser for visualizing single-cell and spatial multiomics data.
An effective tool for single-cell RNA sequencing.
RNA-seq, smRNA-seq, scRNA-seq & ATAC-seq workflows for @cornell-TREX
Epi-Impute: single-cell RNA-seq imputation via integration with single-cell ATAC-seq data
Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Genome Biology
10x Cell Ranger Docker Image
Docker container for combining UniverSC and SCAFE for 5' RNA-Seq data
I've written a few functions that help me look through scRNA-seq data while working with Seurat.
A reference matrix atlas of all single cell RNA-seq data on NCBI GEO for mice and humans
Single cell interactive plotting tools
2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF
So you want to do a: Single Cell RNA-seq experiment
Add a description, image, and links to the scrna topic page so that developers can more easily learn about it.
To associate your repository with the scrna topic, visit your repo's landing page and select "manage topics."