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Oct 17, 2017 - Python
protein-structure
Here are 517 public repositories matching this topic...
Superimpose a set of protein structures and report a RSMD matrix, in CSV and Mega-compatible formats, using Pymol as a module
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Jul 6, 2020 - Python
Create pseudoatoms at the centroid of the catalytic atoms of a residue
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Mar 26, 2024 - Rust
Performs large-scale ligand identification, curation and extraction from human structures in the Protein Data Bank.
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Mar 26, 2024 - Python
A sophisticated hybrid model designed for precise protein solubility prediction
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Aug 29, 2024 - Python
InteractoMIX: a suite of computational tools to exploit interactomes in biological and clinical research.
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Jun 17, 2016 - CSS
Alignement structurale d'une séquence protéique sur une structure protéique 3D.
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Feb 27, 2019 - Python
Mapping Pharos Targets to PDB IDs
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Jun 5, 2019 - Jupyter Notebook
Course schedule from experience as a selected Undergraduate Teaching Assistant at the University of Pittsburgh course, BIOSC 1540 - Computational Structural Biology, taught by Dr. Jacob Durrant.
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Mar 18, 2019 - Python
classification of human cdk2 conformations
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Jan 30, 2022 - Jupyter Notebook
This repository contains codes for the regeneration of figures 3b and 3g in Tam, C., Kukimoto-Niino, M., Miyata-Yabuki, Y. et al. Targeting Ras-binding domain of ELMO1 by computational nanobody design. Commun Biol 6, 284 (2023).
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Sep 7, 2023 - Jupyter Notebook
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Mar 30, 2024 - Jupyter Notebook
PPM.Mk.I.Beta
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Aug 15, 2024 - Python
PSIST algorithm to index and query 3D protien structures
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Mar 29, 2020 - C++
Meta-Bio-Cargo predict #Ru-Bi-CO-S protein
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Mar 20, 2021 - Rust
This is a plugin for PyMol 2.x under Windows to find and show Ca-ion sites in a protein structure in pdb format using the Feature program.
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Apr 12, 2022 - Python
The aim of this project is to correctly predict the con- tact types in given protein structures, which are to be pre- sented in PDB file format. MODELS: Random Forest, Neural Network, Support Vector Machine.
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Sep 23, 2022 - Jupyter Notebook
In this project a standardised AlphaFold 2-based molecular replacement strategy is developed and implemented in an existing biomolecule structure solution pipeline at MAX IV Laboratory. It can be run on high performance clusters similar to the LUNARC (https://www.lunarc.lu.se/). A standalone and implemented version of the pipeline exists.
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May 6, 2024 - Python
Retrieving nucleotide sequences for PDB and Uniprot structure on a large scale. Analysis of synonymous codons and codon usage on protein structure and evolution.
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Aug 25, 2024 - Jupyter Notebook
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