Blazing fast toolkit to work with .hic and .cool files
-
Updated
Sep 22, 2024 - C++
Blazing fast toolkit to work with .hic and .cool files
3DGB is a workflow to build 3D models of genomes from HiC data
High-performance stochastic modeling of DNA loop extrusion interactions
This Nextflow DSL2 pipeline takes aligned HiC reads, creates contact maps and a table of statistics.
Snakemake pipeline for analysis and normalization of Hi-C data starting from fastq.gz files. It includes the possibility to perform grouped analyses, TAD, loops and stripes detections, as well as differential compartment and chromatin interaction analyses.
Extract Sequence from Genome According to Annotation File
Configurable Hi-C pipeline that is easy to use
Pipeline for HiCAR data, a robust and sensitive multi-omic co-assay for simultaneous measurement of transcriptome, chromatin accessibility and cis-regulatory chromatin contacts.
HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.
Interactive visualizer ad manual scaffolder of Hi-C contact maps. All-in-one Java-based implementation.
a Snakemake version of distiller - the Open2C Hi-C mapping workflow
Hi-C Architect for Neural Networks
Snakemake wrapper around the Arima Capture Hi-C (CHiC) workflow
Add a description, image, and links to the hic topic page so that developers can more easily learn about it.
To associate your repository with the hic topic, visit your repo's landing page and select "manage topics."