A collection of resources regarding the interplay between differential equations, deep learning, dynamical systems, control and numerical methods.
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Updated
Sep 13, 2024
A collection of resources regarding the interplay between differential equations, deep learning, dynamical systems, control and numerical methods.
Nengo library of additional extensions
Sample code for the NIPS paper "Scalable Variational Inference for Dynamical Systems"
control theory repo
Whole-cell modeling tutorials
Simulation and animation of simple passive dynamic walking models in Matlab
Employing Human Social-Motor Solutions for Human-Machine Interaction in Dynamical Task Contexts
The Flexible Epidemic Modeling Pipeline
Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.
Package for the data-driven representation of non-linear dynamics over manifolds based on a statistical distribution of local phase portrait features. Includes specific example on dynamical systems, synthetic- and real neural datasets. https://agosztolai.github.io/MARBLE/
COPASI biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
JED is a program for performing Essential Dynamics of protein trajectories written in Java. JED is a powerful tool for examining the dynamics of proteins from trajectories derived from MD or Geometric simulations. Currently, there are two types of PCA: distance-pair and Cartesian, and three models: COV, CORR, and PCORR.
Kinetic modeling of glucose and acetate metabolisms in E. coli
Framework for systematically and scalably designing whole-cell models from large datasets
Official implementation of Enhanced Gaussian process dynamical models with knowledge transfer for long-term battery degradation forecasting.
tellurium biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
BioNetGen biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Dynamical System created from mapping of curvature and torsion of image of parametric planar curve when stereographically projected to the unit sphere.
A library of hybrid N-body + test particle simulations for dynamical modeling of galaxy interactions.
Modified version of the Identikit 2 tool for modeling galaxy interactions
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