Convert experiment dataset of cells into one csv format.
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Updated
Sep 6, 2017 - Java
Convert experiment dataset of cells into one csv format.
A small tool in python to read the bright-field image data and the phase image data recovered from a Digital holographic microscope (DHM) and segment the nuclei to calculate physical parameters like roughness and volume.
Visualize similar cells on a 2D plot using t-SNE
Track 2D cell motion and mitosis in time-lapse microscopy
HIPA Tool GUI
Deep Learning based segmentation and tracking to understand the dynamics and morphology of cells over time.
Shape-Out has been superseded by Shape-Out 2.
GO Webapp for the HIPA Tool
High Intensity Peak Analysis for detecting High Intensity Cells
manipulation and analysis of phase microscopy data
Integrated Cell project implemented in pytorch
A web-based application for Cell Shape Analysis.
This remote module contains classes related to segmentation of biological cells. It has classes to represent cells' shape, color, and growth state. It also has classes to represent a cell genome, whose expression is modeled by differential equations.
QuPath - Bioimage analysis & digital pathology
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