HIPA Tool GUI
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Updated
Sep 11, 2019 - C#
HIPA Tool GUI
GO Webapp for the HIPA Tool
Convert experiment dataset of cells into one csv format.
Deep Learning based segmentation and tracking to understand the dynamics and morphology of cells over time.
Visualize similar cells on a 2D plot using t-SNE
A small tool in python to read the bright-field image data and the phase image data recovered from a Digital holographic microscope (DHM) and segment the nuclei to calculate physical parameters like roughness and volume.
A web-based application for Cell Shape Analysis.
High Intensity Peak Analysis for detecting High Intensity Cells
manipulation and analysis of phase microscopy data
This remote module contains classes related to segmentation of biological cells. It has classes to represent cells' shape, color, and growth state. It also has classes to represent a cell genome, whose expression is modeled by differential equations.
Track 2D cell motion and mitosis in time-lapse microscopy
Shape-Out has been superseded by Shape-Out 2.
Integrated Cell project implemented in pytorch
QuPath - Bioimage analysis & digital pathology
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