biobakery
Here are 54 public repositories matching this topic...
BIOM-Mass Data Portal UI (developed from the NCI-GDC portal UI framework)
-
Updated
Oct 1, 2024 - JavaScript
MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data
-
Updated
Sep 24, 2024 - Python
bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validated tools and parameters.
-
Updated
Sep 18, 2024 - Python
High-quality circular representations of taxonomic and phylogenetic trees
-
Updated
Aug 7, 2024 - Python
Precise phylogenetic analysis of microbial isolates and genomes from metagenomes
-
Updated
Jul 23, 2024 - Python
MaAsLin2: Microbiome Multivariate Association with Linear Models
-
Updated
Jul 15, 2024 - R
AnADAMA2 is the next generation of AnADAMA (Another Automated Data Analysis Management Application). AnADAMA is a tool to capture your workflow and execute it efficiently on your local machine or in a grid compute environment (ie. sun grid engine or slurm).
-
Updated
Jun 20, 2024 - Python
MMUPHin: Meta-analysis Methods with Uniform Pipeline for Heterogeneity in Microbiome Studies
-
Updated
May 19, 2024 - R
-
Updated
Mar 26, 2024 - HTML
The CCREPE (Compositionality Corrected by REnormalizaion and PErmutation) package is designed to assess the significance of general similarity measures in compositional datasets.
-
Updated
Mar 26, 2024 - R
-
Updated
Mar 26, 2024 - TeX
ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then search for these markers in metagenomic data and determine the presence and abundance of the protein families of interest.
-
Updated
Mar 26, 2024 - Python
Improve this page
Add a description, image, and links to the biobakery topic page so that developers can more easily learn about it.
Add this topic to your repo
To associate your repository with the biobakery topic, visit your repo's landing page and select "manage topics."