archaea
Here are 18 public repositories matching this topic...
A spin on the Tele* scripts, this time processing and comparing protein sequence input against those of Halobacterium genus
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May 12, 2021 - Shell
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Apr 30, 2021
*Cerna-Vargas J-P., *Gumerov V.M., Krell T., Zhulin I.B. (2023) Amine recognizing domain in diverse receptors from bacteria and archaea evolved from the universal amino acid sensor. PNAS, 120, e2305837120
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Mar 24, 2023
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Apr 20, 2023 - R
Design clade-specific primers targeting a pan-genome core gene
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Oct 10, 2022 - Jupyter Notebook
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Jan 24, 2019 - R
V. M. Gumerov, E. P. Andrianova, M. A. Matilla, Karen M. Page, Elizabet Monteagudo-Cascales, A. C. Dolphin, T. Krell, I. B. Zhulin (2022). Amino acid sensor conserved from bacteria to humans.
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Jul 25, 2023 - Python
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Aug 9, 2022 - Python
Methanoperedens nitroreducens genome-scale metabolic model.
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Feb 8, 2022 - Jupyter Notebook
This is a microbial amplicon sequence (16S and 18S iTag) data and analyses pipeline corresponding to the manuscript, "Community ecology across bacteria, archaea and microbial eukaryotes in the sediment and seawater of coastal Puerto Nuevo, Baja California" for public benefit and usage.
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Jul 20, 2019
A library to get information on organisms and UniProt identifiers. This includes growth temperature, growth ph, pfam domains, taxonomic lineage.
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Jun 11, 2024 - Python
🦠📇 Microbial genomes-to-report pipeline
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Aug 13, 2024 - Python
A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima
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Sep 30, 2020 - Python
GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.
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Sep 11, 2024 - Python
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