Physics Engine of Cellular Biophysics and 3D Surface Motions
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Updated
Sep 11, 2024 - C++
Physics Engine of Cellular Biophysics and 3D Surface Motions
2D simulation of confluent cell collectives based on a coarse-grained bead-spring model
The Active Matter Evaluation Package (AMEP) - a Python library for the analysis of particle-based and continuum simulation data of soft and active matter systems
A Python module intended to make cell segmentation, tracking and subsequent (mostly biophysical) statisticial analysis easy
A simulation framework for nonequilibrium statistical physics
Multi agent reinforcement learning for intelligent active matter
Code to model active loop extrusion on chromatin using hybrid MD-MC.
Sedimention of active Brownian particles in a box. Codes for numerical simulations and numerical solution of PDEs.
Simulations of flocking behaviour in active agents, using a simple Viscek model
Active Matter simulation
Solver of isotropic, active-reactive fluid equations, in 1D and 2D.
Restricted active Potts model. Codes for numerical solution of PDEs.
Code developped for a PhD project at the Université de Montpellier, supervised by Ludovic Berthier (Montpellier) and Robert Jack (Cambridge).
CUDA Vicsek model simulator
A python library for simulating the dynamics of active filaments.
GPU-accelerated solver of isotropic, active-reactive fluid equations, in 2D.
A set of MATLAB codes that simulate a model for the motion of phototactic cyanobacterial cells
A set of MATLAB codes that simulate a model for the motion of phototactic cyanobacterial cells
Simulation of active particles confined to arbitrary curved surfaces
Simulated Viscek-model in 2D in Python
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