Simulated Viscek-model in 2D in Python
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Updated
Jul 16, 2022 - Jupyter Notebook
Simulated Viscek-model in 2D in Python
Wiki of a research project at the University of British Columbia focusing on a simple model of active particles, supervised by Jörg Rottler.
Python scripts for active matter analysis
Solver of isotropic, active-reactive fluid equations, in 1D and 2D.
Code to model active loop extrusion on chromatin using hybrid MD-MC.
GPU-accelerated solver of isotropic, active-reactive fluid equations, in 2D.
Wiki of a research project at the University of Cambridge, supervised by Robert Jack, and at the Université de Paris, supervised by Frédéric van Wijland.
A set of MATLAB codes that simulate a model for the motion of phototactic cyanobacterial cells
2D simulation of confluent cell collectives based on a coarse-grained bead-spring model
A set of MATLAB codes that simulate a model for the motion of phototactic cyanobacterial cells
Phase Separation Classification using TensorFlow
Physics Engine of Cellular Biophysics and 3D Surface Motions
Restricted active Potts model. Codes for numerical solution of PDEs.
Simulation of active particles confined to arbitrary curved surfaces
Code developed for a research project at the University of Cambridge, supervised by Robert Jack.
CUDA Vicsek model simulator
Codes used in "Flocking and reorientation transition in the 4-state active Potts model" by S. Chatterjee, M. Mangeat, R. Paul and H. Rieger, published in EPL 130, 66001 (2020); and "Flocking with a q-fold discrete symmetry: Band-to-lane transition in the active Potts model" by M. Mangeat, S. Chatterjee, R. Paul and H. Rieger, published in Phys. …
A python library for simulating the dynamics of active filaments.
Code developped for a PhD project at the Université de Montpellier, supervised by Ludovic Berthier (Montpellier) and Robert Jack (Cambridge).
Masters thesis: Active matter
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