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retouch

Code for RETOUCH challenge

Installation

>> pip install SimpleITK

File description

  • prepare_data.py : Read all OCT images and segmentations and do the following:

    1. if oct segmentation -> write each slice as tiff file
    2. if oct image and vendor spectralasis -> write eac slice
    3. if oct image and vendor Cirrius -> match histogram , do median filtering and write to tiff

    also writes a slice information csv

  • custom_networks.py : Keras model definitions

  • image_preprocessing.py : deprecated