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setup.cfg
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setup.cfg
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[metadata]
name = sgkit-plink
author = sgkit Developers
license = Apache
description = PLINK IO implementations for sgkit
long_description_content_type=text/x-rst
long_description =
**sgkit-plink** contains block array readers for large-scale genomic data stored as PLINK
url = https://github.com/pystatgen/sgkit
classifiers =
Development Status :: 2 - Pre-Alpha
License :: OSI Approved :: Apache Software License
Operating System :: OS Independent
Intended Audience :: Science/Research
Programming Language :: Python
Programming Language :: Python :: 3
Programming Language :: Python :: 3.7
Programming Language :: Python :: 3.8
Topic :: Scientific/Engineering
[options]
packages = sgkit_plink
zip_safe = False # https://mypy.readthedocs.io/en/latest/installed_packages.html
include_package_data = True
python_requires = >=3.7
install_requires =
numpy
xarray
dask[dataframe,array]
bed-reader
setuptools >= 41.2 # For pkg_resources
setup_requires =
setuptools >= 41.2
setuptools_scm
[coverage:report]
fail_under = 100
[flake8]
ignore =
# whitespace before ':' - doesn't work well with black
E203
E402
# line too long - let black worry about that
E501
# do not assign a lambda expression, use a def
E731
# line break before binary operator
W503
[isort]
default_section = THIRDPARTY
known_first_party = sgkit
known_third_party = bed_reader,dask,numpy,pytest,setuptools,xarray
multi_line_output = 3
include_trailing_comma = True
force_grid_wrap = 0
use_parentheses = True
line_length = 88
[mypy-pytest.*]
ignore_missing_imports = True
[mypy-bed_reader.*]
ignore_missing_imports = True
[mypy-numpy.*]
ignore_missing_imports = True
[mypy-pandas.*]
ignore_missing_imports = True
[mypy-dask.*]
ignore_missing_imports = True
[mypy-pysnptools.*]
ignore_missing_imports = True
[mypy-sgkit.*]
ignore_missing_imports = True
[mypy-sgkit_plink.*]
allow_redefinition = True
[mypy-setuptools]
ignore_missing_imports = True
[mypy-sgkit_plink.tests.*]
disallow_untyped_defs = False