README.md

afm-particle-analysis

The particle analysis for Actomic Force Microscope images

Example of config file (e.g. param.yaml):

paths: &PATHS
    input_path: '/input/path'
    output_path: '/output/path/result'

samples:
  - filename: 'data.000'
    name: 'Sample_001'
    pixel_scale: 0.512
    segmentation:
      min_dist: 5
      peak_footprint: 10
      filter_footprint: 5
    intensity_scale:
      min: 5
      max: 95
    bp_filter:
      min: 5
      max: 15
    histogram:
      lang: 'en'
      range: [0,400]
      bins: 30
      color: 'red'
      figsize: [10,6]
    <<: *PATHS