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dvc.lock
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schema: '2.0'
stages:
convert_sly_to_int:
cmd:
- rm -rf data/interim || true
- python src/data/convert_sly_to_int.py
deps:
- path: configs/convert_sly_to_int.yaml
md5: dd9bc07066dc7b3f9c423d194d9c5ad2
size: 132
- path: data/sly
md5: 657c03030d21a0fdc8cb45857af24495.dir
size: 8210646507
nfiles: 2012
- path: src/data/convert_sly_to_int.py
md5: 861578d1fef3787258b7445dd0b4877a
size: 7975
- path: src/data/utils_sly.py
md5: 56d50266933832f27463c69753bfad84
size: 7665
outs:
- path: data/interim/img
md5: bbfe62305cf388907a4e2bc6e49497ac.dir
size: 4423453676
nfiles: 1000
- path: data/interim/metadata.xlsx
md5: 229dcc29505e49719c6653ab4a34588e
size: 1355126
segment_lungs:
cmd:
- rm -rf data/interim_lungs || true
- python src/segment_lungs.py
deps:
- path: configs/segment_lungs.yaml
md5: e42acc7fdb8eb385aa391aa3d6aa43bc
size: 263
- path: data/interim/img
md5: bbfe62305cf388907a4e2bc6e49497ac.dir
size: 4423453676
nfiles: 1000
- path: models/lung_segmentation/DeepLabV3
md5: eee834282e2cc576bfe642c966580fc2.dir
size: 29553297
nfiles: 1
- path: models/lung_segmentation/FPN
md5: 8653b9bc3b60a411cd0bd6a6cdf835c9.dir
size: 23356124
nfiles: 1
- path: models/lung_segmentation/MAnet
md5: ee18cc5729cb3b9915ee0b6fc1b1a172.dir
size: 54276223
nfiles: 1
- path: src/models/lung_segmenter.py
md5: 5efdd930846fd426202dfb6b69b45561
size: 6567
- path: src/segment_lungs.py
md5: 66d5265e06c7646dbfe6b0499d9681a2
size: 1965
outs:
- path: data/interim_lungs
md5: e07176b49f0507192502a5ce8c8d3913.dir
size: 475301558
nfiles: 3000
fuse_maps:
cmd:
- rm -rf data/interim_fused || true
- python src/fuse_maps.py
deps:
- path: configs/fuse_maps.yaml
md5: 4880c77bab4ef8afa221540522a29945
size: 232
- path: data/interim_lungs
md5: e07176b49f0507192502a5ce8c8d3913.dir
size: 475301558
nfiles: 3000
- path: src/data/utils_sly.py
md5: 56d50266933832f27463c69753bfad84
size: 7665
- path: src/fuse_maps.py
md5: 68cf3768ddf79a99b33ff586441c325c
size: 5685
- path: src/models/map_fuser.py
md5: a9b32e9c3d876967b8d3321eb3759a19
size: 2844
- path: src/models/mask_processor.py
md5: 9d6d74e919350da1f1ea5fc02ccd4309
size: 1894
outs:
- path: data/interim_fused/map
md5: dee33c33a210e010a7f5d3c565eb88a6.dir
size: 158887463
nfiles: 1000
- path: data/interim_fused/mask
md5: f6c527c399485efa046cf0f1b0fd9726.dir
size: 16801204
nfiles: 1000
- path: data/interim_fused/metadata.xlsx
md5: 0a1b15ddf344f3f1f03f925130a97199
size: 5657114
convert_int_to_final:
cmd:
- rm -rf data/final || true
- python src/data/convert_int_to_final.py
deps:
- path: configs/convert_int_to_final.yaml
md5: 704667459b706a9534ebe87089baa6b2
size: 611
- path: data/interim/img
md5: bbfe62305cf388907a4e2bc6e49497ac.dir
size: 4423453676
nfiles: 1000
- path: data/interim/metadata.xlsx
md5: 229dcc29505e49719c6653ab4a34588e
size: 1355126
- path: data/interim_fused/metadata.xlsx
md5: 0a1b15ddf344f3f1f03f925130a97199
size: 5657114
- path: src/data/convert_int_to_final.py
md5: b7023dacce92b71a33579c91560b2372
size: 7432
- path: src/data/utils_final.py
md5: 4da614cef83cfbd017525adf5b5cc8bb
size: 8282
outs:
- path: data/final/img
md5: e845d33586856ede0fc96cea87a8ac03.dir
size: 2585867050
nfiles: 1000
- path: data/final/metadata.xlsx
md5: 25eff015d4682ee45252bdb53b1fc9fb
size: 925026
convert_final_to_coco:
cmd:
- rm -rf data/coco || true
- python src/data/convert_final_to_coco.py
deps:
- path: configs/convert_final_to_coco.yaml
md5: 3d804671c9b2991f86d45298503f98e8
size: 232
- path: data/final/img
md5: e845d33586856ede0fc96cea87a8ac03.dir
size: 2585867050
nfiles: 1000
- path: data/final/metadata.xlsx
md5: 25eff015d4682ee45252bdb53b1fc9fb
size: 925026
- path: src/data/convert_final_to_coco.py
md5: 70f420c372ae60a986f498d60f461563
size: 5768
- path: src/data/utils_coco.py
md5: fe5cc34646f753c926b4ae39b42a3bdd
size: 1412
- path: src/data/utils_sly.py
md5: 56d50266933832f27463c69753bfad84
size: 7665
outs:
- path: data/coco/metadata.xlsx
md5: 005bb284fc9b4e32ac06e2b6cd168111
size: 623141
- path: data/coco/test
md5: 64b5119e25f450b18e156aa3b5827b30.dir
size: 513268791
nfiles: 202
- path: data/coco/train
md5: 2664abf3df17e0076192203bd048bf39.dir
size: 2012622132
nfiles: 781