catsanddogs_bold

[LunaSare]

catsanddogs_bold <- make_bold_otol_tree(input = catsanddogs_query, chronogram = FALSE)

OToL synthetic tree of input taxa is not fully resolved (37 nodes/45 tips).
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Found more than one class "Annotated" in cache; using the first, from namespace 'RNeXML'
Also defined by ‘S4Vectors’
Found more than one class "Annotated" in cache; using the first, from namespace 'RNeXML'
Also defined by ‘S4Vectors’
Found more than one class "Annotated" in cache; using the first, from namespace 'RNeXML'
Also defined by ‘S4Vectors’
Found more than one class "Annotated" in cache; using the first, from namespace 'RNeXML'
Also defined by ‘S4Vectors’
Found more than one class "Annotated" in cache; using the first, from namespace 'RNeXML'
Also defined by ‘S4Vectors’
Found more than one class "Annotated" in cache; using the first, from namespace 'RNeXML'
Also defined by ‘S4Vectors’
Error in names(inputSeqs) <- paste0("Seq", 1:length(inputSeqs)) :
  'names' attribute [2] must be the same length as the vector [0]
In addition: Warning message:
In scan(file = file, what = what, sep = sep, quote = quote, dec = dec,  :
  EOF within quoted string