diff --git a/articles/hardware/np2e/gui.md b/articles/hardware/np2e/gui.md index 6dfbcda..7b35b20 100644 --- a/articles/hardware/np2e/gui.md +++ b/articles/hardware/np2e/gui.md @@ -50,16 +50,16 @@ When opening the GUI, there is a default probe configuration that is loaded and ## Open Probe Configuration GUI -![Open the GUI](../../..//images/neuropixelsv2e-gui-tut/bonsai-editor-where-to-click.png){width=700px} +![Open the GUI](../../../images/neuropixelsv2e-gui-tut/bonsai-editor-where-to-click.png) Steps to open the Probe Configuration GUI: - Select the `NeuropixelsV2eHeadstage` node. - Click on the `NeuropixelsV2eProbeConfiguration` to edit (either `ProbeConfigurationA` or `ProbeConfigurationB`). -- Select the button showing three dots (ellipsis) on the right-most part of the property pane (#1 above). +- Select the ... button on the right-most part of the property pane (#1 above). Once opened, if no probe calibration file has been selected the window should look like the image below. To view the probe, follow the steps [below](#choosing-a-probe-calibration-file). -![Probe Configuration GUI](../../..//images/neuropixelsv2e-gui-tut/probeconfiguration-dialog.png){width=700px} +![Probe Configuration GUI](../../../images/neuropixelsv2e-gui-tut/probeconfiguration-dialog.png) > [!TIP] > The controls shown for this GUI are the same as the ones shown for the `NeuropixelsV2e Headstage Configuration` below. @@ -75,9 +75,9 @@ Upon opening the GUI for the first time, if no probe calibration file was set in > [!NOTE] > Files are expected to be named `XXXXXXXXXXX_gainCalValues.csv`, where "XXXXXXXXXXX" is the probe serial number. -Once the file is selected, press `Open` or Enter. This will populate the text box with the filepath to the calibration file, and enable visualization of the electrodes. Below is a view of the Probe Configuration GUI that has been opened for `Probe A` with a gain calibration file selected. +Once the file is selected, press `Open` or Enter. This will populate the text box with the filepath to the calibration file, and enable visualization of the electrodes. Below is a view of the Probe Configuration GUI that has been opened for `Probe A` with a gain calibration file selected. Note that the `Gain Correction` textbox and the `Gain Calibration SN: ` status strip are automatically filled in with values found in the calibration file. -![Probe Configuration GUI with Probe shown](../../..//images/neuropixelsv2e-gui-tut/probeconfiguration-dialog-with-probe.png){width=700px,align="center"} +![Probe Configuration GUI with Probe shown](../../../images/neuropixelsv2e-gui-tut/probeconfiguration-dialog-with-probe.png) ### Selecting channel reference @@ -169,7 +169,7 @@ To load the default channel configuration at any time, navigate to the File drop ## Open Headstage Configuration GUI -![Open the GUI](../../../images/neuropixelsv2e-gui-tut/bonsai-editor-where-to-click.png){width=700px} +![Open the GUI](../../../images/neuropixelsv2e-gui-tut/bonsai-editor-where-to-click.png) Step to open the headstage configuration GUI @@ -177,22 +177,22 @@ Step to open the headstage configuration GUI Once opened, if no probe calibration is selected for either `Probe A` or `Probe B`, then both tabs will only show their controls on the right and no probes (see below). -![Headstage Configuration GUI](../../../images/neuropixelsv2e-gui-tut/headstage-dialog.png){width=700px} +![Headstage Configuration GUI](../../../images/neuropixelsv2e-gui-tut/headstage-dialog.png) ### Configure Probe A Using the headstage configuration GUI is exactly the same as using the [probe configuration GUI](#open-probe-configuration-gui). After the GUI has been [opened](#open-headstage-configuration-gui), and a probe calibration file has been [selected](#choosing-a-probe-calibration-file), `Probe A` will be drawn in the corresponding tab (see below). -![Headstage Configuration GUI with probe A](../../../images/neuropixelsv2e-gui-tut/neuropixelsv2e-headstage-dialog-with-probe-a.png){width=700px} +![Headstage Configuration GUI with probe A](../../../images/neuropixelsv2e-gui-tut/headstage-dialog-with-probe-a.png) ### Configure Probe B Using the headstage configuration GUI is exactly the same as using the [probe configuration GUI](#open-probe-configuration-gui). After the GUI has been [opened](#open-headstage-configuration-gui), and a probe calibration file has been [selected](#choosing-a-probe-calibration-file), `Probe B` will be drawn in the corresponding tab (see below). -![Headstage Configuration GUI with probe B](../../../images/neuropixelsv2e-gui-tut/neuropixelsv2e-headstage-dialog-with-probe-b.png){width=700px} +![Headstage Configuration GUI with probe B](../../../images/neuropixelsv2e-gui-tut/headstage-dialog-with-probe-b.png) ### Configure Bno055 At the headstage level, there is another device tab listed for a [Bno055](xref:OpenEphys.Onix1.PolledBno055Data). From this tab, the device can be enabled or disabled by selecting the appropriate value from the drop-down menu next to `Enable`. While the `DeviceAddress` and `DeviceName` values are modifiable here, they have no affect on the underlying device configuration; only changes to the `Enable` property will be respected. -![Headstage Configuration GUI with Bno055](../../../images/neuropixelsv2e-gui-tut/neuropixelsv2e-headstage-dialog-with-bno055.png){width=700px} +![Headstage Configuration GUI with Bno055](../../../images/neuropixelsv2e-gui-tut/headstage-dialog-with-bno055.png) diff --git a/images/neuropixelsv2e-gui-tut/bonsai-editor-where-to-click.png b/images/neuropixelsv2e-gui-tut/bonsai-editor-where-to-click.png index 09bfcac..9f0b52f 100644 Binary files a/images/neuropixelsv2e-gui-tut/bonsai-editor-where-to-click.png and b/images/neuropixelsv2e-gui-tut/bonsai-editor-where-to-click.png differ diff --git a/images/neuropixelsv2e-gui-tut/headstage-dialog-with-bno055.png b/images/neuropixelsv2e-gui-tut/headstage-dialog-with-bno055.png new file mode 100644 index 0000000..f9e989c Binary files /dev/null and b/images/neuropixelsv2e-gui-tut/headstage-dialog-with-bno055.png differ diff --git a/images/neuropixelsv2e-gui-tut/headstage-dialog-with-probe-a.png b/images/neuropixelsv2e-gui-tut/headstage-dialog-with-probe-a.png new file mode 100644 index 0000000..7cbb383 Binary files /dev/null and b/images/neuropixelsv2e-gui-tut/headstage-dialog-with-probe-a.png differ diff --git a/images/neuropixelsv2e-gui-tut/headstage-dialog-with-probe-b.png b/images/neuropixelsv2e-gui-tut/headstage-dialog-with-probe-b.png new file mode 100644 index 0000000..a271906 Binary files /dev/null and b/images/neuropixelsv2e-gui-tut/headstage-dialog-with-probe-b.png differ diff --git a/images/neuropixelsv2e-gui-tut/headstage-dialog.png b/images/neuropixelsv2e-gui-tut/headstage-dialog.png index cab2422..c6f8306 100644 Binary files a/images/neuropixelsv2e-gui-tut/headstage-dialog.png and b/images/neuropixelsv2e-gui-tut/headstage-dialog.png differ diff --git a/images/neuropixelsv2e-gui-tut/neuropixelsv2e-headstage-dialog-with-bno055.png b/images/neuropixelsv2e-gui-tut/neuropixelsv2e-headstage-dialog-with-bno055.png deleted file mode 100644 index 6baf5d4..0000000 Binary files a/images/neuropixelsv2e-gui-tut/neuropixelsv2e-headstage-dialog-with-bno055.png and /dev/null differ diff --git a/images/neuropixelsv2e-gui-tut/neuropixelsv2e-headstage-dialog-with-probe-a.png b/images/neuropixelsv2e-gui-tut/neuropixelsv2e-headstage-dialog-with-probe-a.png deleted file mode 100644 index ae77d27..0000000 Binary files a/images/neuropixelsv2e-gui-tut/neuropixelsv2e-headstage-dialog-with-probe-a.png and /dev/null differ diff --git a/images/neuropixelsv2e-gui-tut/neuropixelsv2e-headstage-dialog-with-probe-b.png b/images/neuropixelsv2e-gui-tut/neuropixelsv2e-headstage-dialog-with-probe-b.png deleted file mode 100644 index 0b4fe55..0000000 Binary files a/images/neuropixelsv2e-gui-tut/neuropixelsv2e-headstage-dialog-with-probe-b.png and /dev/null differ diff --git a/images/neuropixelsv2e-gui-tut/probeconfiguration-dialog-with-probe.png b/images/neuropixelsv2e-gui-tut/probeconfiguration-dialog-with-probe.png index 8992398..48aeeae 100644 Binary files a/images/neuropixelsv2e-gui-tut/probeconfiguration-dialog-with-probe.png and b/images/neuropixelsv2e-gui-tut/probeconfiguration-dialog-with-probe.png differ diff --git a/images/neuropixelsv2e-gui-tut/probeconfiguration-dialog.png b/images/neuropixelsv2e-gui-tut/probeconfiguration-dialog.png index 0cc6434..c5b8d1b 100644 Binary files a/images/neuropixelsv2e-gui-tut/probeconfiguration-dialog.png and b/images/neuropixelsv2e-gui-tut/probeconfiguration-dialog.png differ diff --git a/images/neuropixelsv2e-gui-tut/probeconfiguration-enable-electrodes.webm b/images/neuropixelsv2e-gui-tut/probeconfiguration-enable-electrodes.webm index 4b73eb5..5b3c599 100644 Binary files a/images/neuropixelsv2e-gui-tut/probeconfiguration-enable-electrodes.webm and b/images/neuropixelsv2e-gui-tut/probeconfiguration-enable-electrodes.webm differ diff --git a/img-src/neuropixelsv2e-gui/bonsai-editor-where-to-click.xcf b/img-src/neuropixelsv2e-gui/bonsai-editor-where-to-click.xcf index acc2c9e..2470695 100644 Binary files a/img-src/neuropixelsv2e-gui/bonsai-editor-where-to-click.xcf and b/img-src/neuropixelsv2e-gui/bonsai-editor-where-to-click.xcf differ diff --git a/img-src/neuropixelsv2e-gui/headstage-dialog-with-bno055.xcf b/img-src/neuropixelsv2e-gui/headstage-dialog-with-bno055.xcf new file mode 100644 index 0000000..7d9377c Binary files /dev/null and b/img-src/neuropixelsv2e-gui/headstage-dialog-with-bno055.xcf differ diff --git a/img-src/neuropixelsv2e-gui/headstage-dialog-with-probe-a.xcf b/img-src/neuropixelsv2e-gui/headstage-dialog-with-probe-a.xcf new file mode 100644 index 0000000..2bfbb57 Binary files /dev/null and b/img-src/neuropixelsv2e-gui/headstage-dialog-with-probe-a.xcf differ diff --git a/img-src/neuropixelsv2e-gui/headstage-dialog-with-probe-b.xcf b/img-src/neuropixelsv2e-gui/headstage-dialog-with-probe-b.xcf new file mode 100644 index 0000000..44dfa00 Binary files /dev/null and b/img-src/neuropixelsv2e-gui/headstage-dialog-with-probe-b.xcf differ diff --git a/img-src/neuropixelsv2e-gui/headstage-dialog.xcf b/img-src/neuropixelsv2e-gui/headstage-dialog.xcf new file mode 100644 index 0000000..a8cb890 Binary files /dev/null and b/img-src/neuropixelsv2e-gui/headstage-dialog.xcf differ diff --git a/img-src/neuropixelsv2e-gui/neuropixelsv2e-headstage-dialog-with-bno055.xcf b/img-src/neuropixelsv2e-gui/neuropixelsv2e-headstage-dialog-with-bno055.xcf deleted file mode 100644 index 3c33269..0000000 Binary files a/img-src/neuropixelsv2e-gui/neuropixelsv2e-headstage-dialog-with-bno055.xcf and /dev/null differ diff --git a/img-src/neuropixelsv2e-gui/neuropixelsv2e-headstage-dialog-with-probe-a.xcf b/img-src/neuropixelsv2e-gui/neuropixelsv2e-headstage-dialog-with-probe-a.xcf deleted file mode 100644 index 9bf619f..0000000 Binary files a/img-src/neuropixelsv2e-gui/neuropixelsv2e-headstage-dialog-with-probe-a.xcf and /dev/null differ diff --git a/img-src/neuropixelsv2e-gui/neuropixelsv2e-headstage-dialog-with-probe-b.xcf b/img-src/neuropixelsv2e-gui/neuropixelsv2e-headstage-dialog-with-probe-b.xcf deleted file mode 100644 index 4cdeb14..0000000 Binary files a/img-src/neuropixelsv2e-gui/neuropixelsv2e-headstage-dialog-with-probe-b.xcf and /dev/null differ diff --git a/img-src/neuropixelsv2e-gui/neuropixelsv2e-headstage-dialog.xcf b/img-src/neuropixelsv2e-gui/neuropixelsv2e-headstage-dialog.xcf deleted file mode 100644 index 57a852d..0000000 Binary files a/img-src/neuropixelsv2e-gui/neuropixelsv2e-headstage-dialog.xcf and /dev/null differ diff --git a/img-src/neuropixelsv2e-gui/neuropixelsv2e-probeconfiguration-dialog-with-probe.xcf b/img-src/neuropixelsv2e-gui/neuropixelsv2e-probeconfiguration-dialog-with-probe.xcf deleted file mode 100644 index dc225d7..0000000 Binary files a/img-src/neuropixelsv2e-gui/neuropixelsv2e-probeconfiguration-dialog-with-probe.xcf and /dev/null differ diff --git a/img-src/neuropixelsv2e-gui/neuropixelsv2e-probeconfiguration-dialog.xcf b/img-src/neuropixelsv2e-gui/neuropixelsv2e-probeconfiguration-dialog.xcf deleted file mode 100644 index 7f52fd2..0000000 Binary files a/img-src/neuropixelsv2e-gui/neuropixelsv2e-probeconfiguration-dialog.xcf and /dev/null differ diff --git a/img-src/neuropixelsv2e-gui/probeconfiguration-dialog-with-probe.xcf b/img-src/neuropixelsv2e-gui/probeconfiguration-dialog-with-probe.xcf new file mode 100644 index 0000000..8a1944c Binary files /dev/null and b/img-src/neuropixelsv2e-gui/probeconfiguration-dialog-with-probe.xcf differ diff --git a/img-src/neuropixelsv2e-gui/probeconfiguration-dialog.xcf b/img-src/neuropixelsv2e-gui/probeconfiguration-dialog.xcf new file mode 100644 index 0000000..598e6d1 Binary files /dev/null and b/img-src/neuropixelsv2e-gui/probeconfiguration-dialog.xcf differ diff --git a/img-src/neuropixelsv2e-gui/probeconfiguration-enable-electrodes.mkv b/img-src/neuropixelsv2e-gui/probeconfiguration-enable-electrodes.mkv deleted file mode 100644 index f3dd608..0000000 Binary files a/img-src/neuropixelsv2e-gui/probeconfiguration-enable-electrodes.mkv and /dev/null differ