-
Notifications
You must be signed in to change notification settings - Fork 5
/
modules.json
207 lines (207 loc) · 9.3 KB
/
modules.json
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
{
"name": "nf-core/hicar",
"homePage": "https://github.com/nf-core/hicar",
"repos": {
"https://github.com/nf-core/modules.git": {
"modules": {
"nf-core": {
"bedtools/genomecov": {
"branch": "master",
"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
"installed_by": ["modules"]
},
"bedtools/sort": {
"branch": "master",
"git_sha": "f1f473b21811b958d1317c4a97c56e16d3ee40f9",
"installed_by": ["modules"]
},
"bwa/index": {
"branch": "master",
"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
"installed_by": ["modules"]
},
"bwa/mem": {
"branch": "master",
"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
"installed_by": ["modules"]
},
"cat/cat": {
"branch": "master",
"git_sha": "0f8a77ff00e65eaeebc509b8156eaa983192474b",
"installed_by": ["modules"]
},
"cooler/balance": {
"branch": "master",
"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
"installed_by": ["modules"]
},
"cooler/cload": {
"branch": "master",
"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
"installed_by": ["modules"]
},
"cooler/digest": {
"branch": "master",
"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
"installed_by": ["modules"]
},
"cooler/dump": {
"branch": "master",
"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
"installed_by": ["modules"]
},
"cooler/merge": {
"branch": "master",
"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
"installed_by": ["modules"]
},
"cooler/zoomify": {
"branch": "master",
"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
"installed_by": ["modules"]
},
"custom/dumpsoftwareversions": {
"branch": "master",
"git_sha": "76cc4938c1f6ea5c7d83fed1eeffc146787f9543",
"installed_by": ["modules"]
},
"cutadapt": {
"branch": "master",
"git_sha": "0f8a77ff00e65eaeebc509b8156eaa983192474b",
"installed_by": ["modules"]
},
"fastqc": {
"branch": "master",
"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
"installed_by": ["modules"]
},
"genmap/index": {
"branch": "master",
"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
"installed_by": ["modules"]
},
"genmap/mappability": {
"branch": "master",
"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
"installed_by": ["modules"]
},
"gffread": {
"branch": "master",
"git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c",
"installed_by": ["modules"]
},
"gunzip": {
"branch": "master",
"git_sha": "38b16706fa3a9d4ee2bf46fa5805e7397e275cdd",
"installed_by": ["modules"]
},
"homer/maketagdirectory": {
"branch": "master",
"git_sha": "0f8a77ff00e65eaeebc509b8156eaa983192474b",
"installed_by": ["modules"]
},
"macs2/callpeak": {
"branch": "master",
"git_sha": "0f8a77ff00e65eaeebc509b8156eaa983192474b",
"installed_by": ["modules"]
},
"multiqc": {
"branch": "master",
"git_sha": "f2d63bd5b68925f98f572eed70993d205cc694b7",
"installed_by": ["modules"]
},
"pairix": {
"branch": "master",
"git_sha": "0f8a77ff00e65eaeebc509b8156eaa983192474b",
"installed_by": ["modules"]
},
"pairtools/dedup": {
"branch": "master",
"git_sha": "278dfc354f62ad086ce5dfce491e4fbeaf0848fc",
"installed_by": ["modules"]
},
"pairtools/flip": {
"branch": "master",
"git_sha": "278dfc354f62ad086ce5dfce491e4fbeaf0848fc",
"installed_by": ["modules"]
},
"pairtools/parse": {
"branch": "master",
"git_sha": "278dfc354f62ad086ce5dfce491e4fbeaf0848fc",
"installed_by": ["modules"]
},
"pairtools/restrict": {
"branch": "master",
"git_sha": "278dfc354f62ad086ce5dfce491e4fbeaf0848fc",
"installed_by": ["modules"]
},
"pairtools/select": {
"branch": "master",
"git_sha": "278dfc354f62ad086ce5dfce491e4fbeaf0848fc",
"installed_by": ["modules"]
},
"pairtools/sort": {
"branch": "master",
"git_sha": "278dfc354f62ad086ce5dfce491e4fbeaf0848fc",
"installed_by": ["modules"]
},
"samtools/flagstat": {
"branch": "master",
"git_sha": "371eff7748d769c2ddc8bd593773523a364a52fe",
"installed_by": ["modules"]
},
"samtools/idxstats": {
"branch": "master",
"git_sha": "371eff7748d769c2ddc8bd593773523a364a52fe",
"installed_by": ["modules"]
},
"samtools/index": {
"branch": "master",
"git_sha": "371eff7748d769c2ddc8bd593773523a364a52fe",
"installed_by": ["modules"]
},
"samtools/merge": {
"branch": "master",
"git_sha": "371eff7748d769c2ddc8bd593773523a364a52fe",
"installed_by": ["modules"]
},
"samtools/sort": {
"branch": "master",
"git_sha": "d5d785b3d8b422cda9c6d84a23f629a8e9ff8cd8",
"installed_by": ["modules"]
},
"samtools/stats": {
"branch": "master",
"git_sha": "371eff7748d769c2ddc8bd593773523a364a52fe",
"installed_by": ["modules"]
},
"samtools/view": {
"branch": "master",
"git_sha": "371eff7748d769c2ddc8bd593773523a364a52fe",
"installed_by": ["modules"]
},
"ucsc/bedclip": {
"branch": "master",
"git_sha": "0f8a77ff00e65eaeebc509b8156eaa983192474b",
"installed_by": ["modules"]
},
"ucsc/bedgraphtobigwig": {
"branch": "master",
"git_sha": "0f8a77ff00e65eaeebc509b8156eaa983192474b",
"installed_by": ["modules"]
},
"ucsc/bigwigaverageoverbed": {
"branch": "master",
"git_sha": "0f8a77ff00e65eaeebc509b8156eaa983192474b",
"installed_by": ["modules"]
},
"ucsc/wigtobigwig": {
"branch": "master",
"git_sha": "0f8a77ff00e65eaeebc509b8156eaa983192474b",
"installed_by": ["modules"]
}
}
}
}
}
}