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[Bug] API-downloaded entries for binary systems containing 'Yb' missing the element in composition #886

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willwerj opened this issue Feb 21, 2024 · 1 comment

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@willwerj
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I have been downloading a large amount of GGA/GGA+U entries for binary systems, and something I have noticed is that all systems containing 'Yb' as one of the two elements are missing the element in the entry composition.

I am using the the API version mp-api==0.39.5

Here is an example from the code that I am using:

entries = MPR.get_entries_in_chemsys(['Yb', 'Fe'], additional_criteria={'thermo_types' [ThermoType.GGA_GGA_U]})

print(entries)

Output:

[mp-1245108-GGA ComputedStructureEntry - Fe100 (Fe)
Energy (Uncorrected) = -819.0566 eV (-8.1906 eV/atom)
Correction = 0.0000 eV (0.0000 eV/atom)
Energy (Final) = -819.0566 eV (-8.1906 eV/atom)
Energy Adjustments:
None
Parameters:
potcar_spec = [{'titel': 'PAW_PBE Fe_pv 06Sep2000', 'hash': '5963411539032ec3298fa675a32c5e64'}]
is_hubbard = False
hubbards = {}
run_type = GGA
Data:
oxide_type = None
aspherical = True
last_updated = 2021-02-06 02:38:34.219000
task_id = mp-1846771
material_id = mp-1245108
oxidation_states = {}
run_type = GGA, mp-1194030-GGA ComputedStructureEntry - Fe28 (Fe)
Energy (Uncorrected) = -232.2525 eV (-8.2947 eV/atom)
Correction = 0.0000 eV (0.0000 eV/atom)
Energy (Final) = -232.2525 eV (-8.2947 eV/atom)
Energy Adjustments:
None
Parameters:
potcar_spec = [{'titel': 'PAW_PBE Fe_pv 06Sep2000', 'hash': '5963411539032ec3298fa675a32c5e64'}]
is_hubbard = False
hubbards = {}
run_type = GGA
Data:
oxide_type = None
aspherical = True
last_updated = 2021-02-04 20:07:29.994000
task_id = mp-1839679
material_id = mp-1194030
oxidation_states = {}
run_type = GGA, mp-150-GGA ComputedStructureEntry - Fe1 (Fe)
Energy (Uncorrected) = -8.3217 eV (-8.3217 eV/atom)
Correction = 0.0000 eV (0.0000 eV/atom)
Energy (Final) = -8.3217 eV (-8.3217 eV/atom)
Energy Adjustments:
None
Parameters:
potcar_spec = [{'titel': 'PAW_PBE Fe_pv 06Sep2000', 'hash': '5963411539032ec3298fa675a32c5e64'}]
is_hubbard = False
hubbards = {}
run_type = GGA
Data:
oxide_type = None
aspherical = True
last_updated = 2020-11-10 19:50:25.172000
task_id = mp-1790517
material_id = mp-150
oxidation_states = {}
run_type = GGA, mp-13-GGA ComputedStructureEntry - Fe1 (Fe)
Energy (Uncorrected) = -8.4700 eV (-8.4700 eV/atom)
Correction = 0.0000 eV (0.0000 eV/atom)
Energy (Final) = -8.4700 eV (-8.4700 eV/atom)
Energy Adjustments:
None
Parameters:
potcar_spec = [{'titel': 'PAW_PBE Fe_pv 06Sep2000', 'hash': '5963411539032ec3298fa675a32c5e64'}]
is_hubbard = False
hubbards = {}
run_type = GGA
Data:
oxide_type = None
aspherical = True
last_updated = 2022-06-09 07:16:42.046000
task_id = mp-2298433
material_id = mp-13
oxidation_states = {}
run_type = GGA, mp-1271198-GGA ComputedStructureEntry - Fe4 (Fe)
Energy (Uncorrected) = -33.6601 eV (-8.4150 eV/atom)
Correction = 0.0000 eV (0.0000 eV/atom)
Energy (Final) = -33.6601 eV (-8.4150 eV/atom)
Energy Adjustments:
None
Parameters:
potcar_spec = [{'titel': 'PAW_PBE Fe_pv 06Sep2000', 'hash': '5963411539032ec3298fa675a32c5e64'}]
is_hubbard = False
hubbards = {}
run_type = GGA
Data:
oxide_type = None
aspherical = True
last_updated = 2020-02-17 05:31:33.195000
task_id = mp-1271198
material_id = mp-1271198
oxidation_states = {}
run_type = GGA, mp-1271068-GGA ComputedStructureEntry - Fe4 (Fe)
Energy (Uncorrected) = -33.8118 eV (-8.4530 eV/atom)
Correction = 0.0000 eV (0.0000 eV/atom)
Energy (Final) = -33.8118 eV (-8.4530 eV/atom)
Energy Adjustments:
None
Parameters:
potcar_spec = [{'titel': 'PAW_PBE Fe_pv 06Sep2000', 'hash': '5963411539032ec3298fa675a32c5e64'}]
is_hubbard = False
hubbards = {}
run_type = GGA
Data:
oxide_type = None
aspherical = True
last_updated = 2020-11-12 05:10:24.957000
task_id = mp-1794171
material_id = mp-1271068
oxidation_states = {}
run_type = GGA, mp-1271128-GGA ComputedStructureEntry - Fe2 (Fe)
Energy (Uncorrected) = -16.7418 eV (-8.3709 eV/atom)
Correction = 0.0000 eV (0.0000 eV/atom)
Energy (Final) = -16.7418 eV (-8.3709 eV/atom)
Energy Adjustments:
None
Parameters:
potcar_spec = [{'titel': 'PAW_PBE Fe_pv 06Sep2000', 'hash': '5963411539032ec3298fa675a32c5e64'}]
is_hubbard = False
hubbards = {}
run_type = GGA
Data:
oxide_type = None
aspherical = True
last_updated = 2020-02-17 05:33:20.228000
task_id = mp-1271230
material_id = mp-1271128
oxidation_states = {}
run_type = GGA, mp-1096950-GGA ComputedStructureEntry - Fe1 (Fe)
Energy (Uncorrected) = -7.9933 eV (-7.9933 eV/atom)
Correction = 0.0000 eV (0.0000 eV/atom)
Energy (Final) = -7.9933 eV (-7.9933 eV/atom)
Energy Adjustments:
None
Parameters:
potcar_spec = [{'titel': 'PAW_PBE Fe_pv 06Sep2000', 'hash': '5963411539032ec3298fa675a32c5e64'}]
is_hubbard = False
hubbards = {}
run_type = GGA
Data:
oxide_type = None
aspherical = True
last_updated = 2020-11-11 23:12:27.721000
task_id = mp-1793302
material_id = mp-1096950
oxidation_states = {}
run_type = GGA, mp-136-GGA ComputedStructureEntry - Fe2 (Fe)
Energy (Uncorrected) = -16.7444 eV (-8.3722 eV/atom)
Correction = 0.0000 eV (0.0000 eV/atom)
Energy (Final) = -16.7444 eV (-8.3722 eV/atom)
Energy Adjustments:
None
Parameters:
potcar_spec = [{'titel': 'PAW_PBE Fe_pv 06Sep2000', 'hash': '5963411539032ec3298fa675a32c5e64'}]
is_hubbard = False
hubbards = {}
run_type = GGA
Data:
oxide_type = None
aspherical = True
last_updated = 2020-11-11 21:14:54.635000
task_id = mp-1792512
material_id = mp-136
oxidation_states = {}
run_type = GGA, mp-568345-GGA ComputedStructureEntry - Fe1 (Fe)
Energy (Uncorrected) = -7.7086 eV (-7.7086 eV/atom)
Correction = 0.0000 eV (0.0000 eV/atom)
Energy (Final) = -7.7086 eV (-7.7086 eV/atom)
Energy Adjustments:
None
Parameters:
potcar_spec = [{'titel': 'PAW_PBE Fe_pv 06Sep2000', 'hash': '5963411539032ec3298fa675a32c5e64'}]
is_hubbard = False
hubbards = {}
run_type = GGA
Data:
oxide_type = None
aspherical = True
last_updated = 2020-05-02 19:51:42.702000
task_id = mp-1382255
material_id = mp-568345
oxidation_states = {}
run_type = GGA]

@munrojm
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munrojm commented Feb 22, 2024

Unfortunately we have had to deprecate all Yb compounds as of the latest data release: https://docs.materialsproject.org/changes/database-versions

We are currently re-running the calculations and will be updating them soon.

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