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params.yml
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params.yml
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# workflows: 'demo'
# workflows: 'fetchngs,rnaseq'
workflows: 'fetchngs,taxprofiler,mag,funcscan'
general:
wf_opts: '-resume -ansi-log false'
demo:
wf_opts: '-profile docker,test'
add_config: 'configs/multiqc.config'
fetchngs:
# params_file: 'tests/data/fetchngs_rnaseq_params.yml'
params_file: 'tests/data/fetchngs_taxprofiler_params.yml'
input: 'tests/data/fetchngs_taxprofiler_samplesheet.csv'
wf_opts: '-profile docker,test -r dev'
add_config: 'configs/multiqc.config'
rnaseq:
wf_opts: '-profile docker,test'
add_config: 'configs/multiqc.config'
taxprofiler:
wf_opts: '-profile docker,test'
add_config: 'configs/multiqc.config'
mag:
params_file: 'tests/data/mag_params.yml'
wf_opts: '-profile docker,test'
add_config: 'configs/multiqc.config'
funcscan:
wf_opts: '-profile docker,test'
add_config: 'configs/multiqc.config'