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getting raw counts #51

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pegahtak opened this issue Jun 9, 2024 · 1 comment

pegahtak commented Jun 9, 2024 •

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Hi and thank you for the great tool.

I am trying to perform DEG analysis with DESeq2 and need raw counts. After using kallisto quant my output looks like this:

Screenshot 1403-03-19 at 22 59 07

Since the estimated count is calculated by MLE I was wondering how would you recommend using that for DESeq2.

Thank you for your attention.

Yenaled commented Jun 9, 2024

Cross-posted: https://www.biostars.org/p/9596637/
^And answer provided there

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