diff --git a/Dockerfile b/Dockerfile index 5d3c139..cd7d99c 100644 --- a/Dockerfile +++ b/Dockerfile @@ -104,6 +104,11 @@ RUN wget https://github.com/arq5x/bedtools2/releases/download/v2.31.0/bedtools.s && chmod +x bedtools.static \ && mv bedtools.static bedtools +## install megadepth + +RUN wget https://github.com/ChristopherWilks/megadepth/releases/download/1.2.0/megadepth \ + && chmod +x megadepth + ENV PATH /opt:$PATH ##install gafpack @@ -125,13 +130,12 @@ ENV PATH /opt/gfainject/target/release:$PATH ##install impg -RUN git clone https://github.com/ekg/impg.git \ +RUN git clone https://github.com/pangenome/impg \ && cd impg \ && cargo install --force --path . ENV PATH /opt/impg/target/release:$PATH - ##install cosigt RUN git clone https://github.com/davidebolo1993/cosigt.git \