0.55.1

🔩 Dependency Updates

• Bidsschematools 0.7.0 API usage update #1243 (@TheChymera @yarikoptic)

Authors: 2

• Horea Christian (@TheChymera)
• Yaroslav Halchenko (@yarikoptic)

0.55.0

🚀 Enhancement

• Support uploading a subset of files from a BIDS dataset #1286 (@jwodder)
• Add dandi service-scripts update-dandiset-from-doi command #1283 (@jwodder)

🐛 Bug Fix

• Use inspect_nwbfile() instead of inspect_nwb(); address bug in recent ruamel.yaml versions #1285 (@jwodder)

🏠 Internal

• Cancel any still-running tests when pushing to a branch or PR #1287 (@jwodder)

🧪 Tests

• Retry test that intermittently fails on NFS #1290 (@jwodder)

Authors: 1

• John T. Wodder II (@jwodder)

0.54.0

🚀 Enhancement

• Support asset path globs in dandi download #1278 (@jwodder)

🐛 Bug Fix

• Explicitly open h5py.File as read-only where we read it #1282 (@yarikoptic)
• C elegans #1276 (@bendichter @yarikoptic)

Authors: 3

• Ben Dichter (@bendichter)
• John T. Wodder II (@jwodder)
• Yaroslav Halchenko (@yarikoptic)

0.53.0

🚀 Enhancement

• Give DandiAPIClient.authenticate() a save_to_keyring parameter #1268 (@jwodder)

🐛 Bug Fix

• Suppress log messages when downloading with pyout, even if no logger has been configured #1279 (@jwodder)
• Accept Other sex as o abbreviation #1275 (@bendichter)
• validate: resolved issues with relative path input #1260 (@TheChymera)
• Log results of requests.utils.super_len() when DANDI_DEVEL_INSTRUMENT_REQUESTS_SUPERLEN is set #1267 (@jwodder)

🧪 Tests

• Add configuration for log buckets in testing #1277 (@danlamanna)
• Make test NFS-safe #1274 (@jwodder)
• Fix test_validate_relative_path #1272 (@jwodder)

Authors: 4

• Ben Dichter (@bendichter)
• Dan LaManna (@danlamanna)
• Horea Christian (@TheChymera)
• John T. Wodder II (@jwodder)

0.52.0

🚀 Enhancement

• enh: add cellline parsing #1254 (@satra @yarikoptic)
• [ENH] Add severity restriction option to dandi-validate #1248 (@TheChymera)

🐛 Bug Fix

• Log more information about retried HTTP requests #1264 (@jwodder)

📝 Documentation

• Add an example for streaming using as_readable + reference to PyNWB examples #1250 (@yarikoptic)

🧪 Tests

• Add CI run testing against NFS #1262 (@jwodder)
• Creating test for file-wise NWB error output listing #1244 (@TheChymera)

Authors: 4

• Horea Christian (@TheChymera)
• John T. Wodder II (@jwodder)
• Satrajit Ghosh (@satra)
• Yaroslav Halchenko (@yarikoptic)

0.51.0

🚀 Enhancement

• validate: Yield error if path is not inside a Dandiset #1237 (@jwodder)
• Add service script for re-extracting remote NWB metadata #1236 (@jwodder)

📝 Documentation

• Corrected docstring #1245 (@TheChymera)

🧪 Tests

• Revert "Restrict mypy to pre-v1.1.1" #1247 (@jwodder)
• Restrict mypy to pre-v1.1.1 #1246 (@jwodder)
• Skip reextract-metadata test if fsspec is not installed #1240 (@jwodder)

🔩 Dependency Updates

• Update for dandischema 0.8.0 #1241 (@jwodder @yarikoptic)

Authors: 3

• Horea Christian (@TheChymera)
• John T. Wodder II (@jwodder)
• Yaroslav Halchenko (@yarikoptic)

0.50.1

🧪 Tests

• skip test_nwb2asset_remote_asset if no fsspec installed #1239 (@yarikoptic)

Authors: 1

• Yaroslav Halchenko (@yarikoptic)

0.50.0

🚀 Enhancement

• Add --ignore ID_REGEX option to dandi validate #1234 (@jwodder)
• download: support for downloading multiple URLs at once; dandiset path is now included in the report #1231 (@jwodder)
• Merging bids_validate into validate, stop validating nested BIDS. #1203 (@TheChymera @jwodder)
• Support re-extracting metadata from remote assets #1214 (@jwodder)

🐛 Bug Fix

• Inform user with a warning in case of jobs > 1 but non pyout format #1222 (@yarikoptic)
• BF: add missing f- for a string #1228 (@yarikoptic)
• Don't even test for cp --reflink support on Windows #1221 (@jwodder)
• Filter out pyout logs from logfile by default #1220 (@jwodder)
• Metadata: add extraction of strain from nwb files #1216 (@satra @yarikoptic)

🏠 Internal

• Use pathlib more in tests #1233 (@jwodder)

📝 Documentation

• Added distribution badge (sadly only one ATM) #1224 (@TheChymera)
• List in documentation the "high level" interfaces corresponding to CLI #1200 (@yarikoptic)

🧪 Tests

• Update parse_purlobourl() test for change to rat metadata #1227 (@jwodder)
• Revert "Temporarily disable all tests which talk to obolibrary" - ontobee said to be back #1226 (@yarikoptic)
• Fix tests: avoid obolibrary (for now) and pynwb 2.3.0 (forever) #1225 (@yarikoptic)
• Test against Python 3.11 #1143 (@jwodder)

Authors: 4

• Horea Christian (@TheChymera)
• John T. Wodder II (@jwodder)
• Satrajit Ghosh (@satra)
• Yaroslav Halchenko (@yarikoptic)

0.49.1

🐛 Bug Fix

• Update for fix to Zarr upload procedure #1215 (@jwodder)

🧪 Tests

• Restore testing against Windows with Python 3.10 #1213 (@jwodder)

Authors: 1

• John T. Wodder II (@jwodder)

0.49.0

🚀 Enhancement

• Update for new Zarr upload procedure; remove no longer needed service-scripts #1202 (@jwodder)
• BF+RF validation #1209 (@yarikoptic)

🐛 Bug Fix

• Make RemoteDandiset.get_version() return a VersionInfo instance with validation error fields #1210 (@jwodder)
• Improve messages displayed when an upload fails #1204 (@jwodder)
• RF/BF: make find_parent_directory_containing operate on absolute path #1188 (@yarikoptic)

🏠 Internal

• Pass $USER to tox envs #1201 (@jwodder)
• boost isort in precommit to 5.12.0 to overcome issue with poetry #1199 (@yarikoptic)

📝 Documentation

• Move doc/design under docs/ where the rest of docs reside #1198 (@yarikoptic)
• Further improve README.md: point to specific sections of handbook, remove lengthy dandi ls --help example #1193 (@melster1010)

🧪 Tests

• Fix type errors; unbound mypy #1207 (@jwodder)
• We no longer need to catch warning as hdmf has fixed the bug #1194 (@TheChymera)
• Joint BIDS-NWB metadata extraction. #1183 (@TheChymera)
• Fix for newer HDMF #1191 (@TheChymera)

🔩 Dependency Updates

• Blacklisting the most recent hdmf version 3.5.0 forbidding its use and breaking CI/testing. #1190 (@TheChymera)

Authors: 4

• Horea Christian (@TheChymera)
• John T. Wodder II (@jwodder)
• Mary Elise Dedicke (@melster1010)
• Yaroslav Halchenko (@yarikoptic)