todo.md

SpikeForest2 todo

Recordings

• [DONE] spikeforest_recordings: Put objects at each study set and study

Analysis

• Reproduce main analysis [IN PROGRESS]
  • [PARTIAL-DONE] Write main_analysis.py
  • Wrap remaining sorters
  • Expose parameters of sorters
  • [DONE] Implement non-sorter processing
    • [DONE] Summarize recording
    • [DONE] Summarize sorting
    • [DONE] Compare with ground truth
  • Parallelize (hither)
  • Interface with slurm (hither)
• Improved timing reporting

I/O

• AutoSortingExtractor: Specify output format of sorting.
  • For example, firings.mda, json
  • sf-sort: --output-format or -f argument

Widgets

• View heatmap in Analysis widget
• View sorting result
• View comparison with ground truth
• sf-browse-recordings
  • Automatically get hash from spikeforest_recordings repo