Support CWL Prov with cwltool for OGC API - Processes IPT

[fmigneault]

Description

Given the rising need for IPT (Integrity, Provenance, Trust) through OGC APIs and their workflow processing, the provenance capabilities of CWL should be leveraged to accomplish this goal. This would add metadata references within the CWL Application Packages themselves, allowing better open-science and IPT workflow tracking.

To Do

• GET /jobs/{jobId}/run to return the PROV-JSON produced by cwltool --provenance

• Alternate PROV-XML/RDF/etc. if Accept requests it

• When generating cwltool --provenance results, avoid duplicating results already found in WPS-outputs to save space (use their URI for cross-reference)

• Any additional metadata/links pointing at the specific job and process executed that should be embedded in the PROV contents

• Cross-walk with Support POST /jobs for various workflow implementations #716 requirements

References

• https://github.com/common-workflow-language/cwlprov (see cwltool --provenance)
• example run with OSPD algae workflow: https://gitlab.ogc.org/ogc/T20-GDC/-/wikis/GDC-Provenance-demonstration-GeoLabs
• consider new options to avoid data duplication of I/O in provenance folder
  Prov data input output common-workflow-language/cwltool#1989
• PROV: https://www.w3.org/TR/prov-overview/
• PROV-LINKS: https://www.w3.org/TR/2013/NOTE-prov-links-20130430/
• PROV-JSON: https://www.w3.org/submissions/prov-json/
• PROV-RDF: https://www.w3.org/TR/2013/REC-prov-o-20130430/
• PROV-HTML: https://www.w3.org/TR/2013/REC-prov-n-20130430/
• PROV-XML: https://www.w3.org/TR/2013/NOTE-prov-xml-20130430/