From 6bf46cb163bb6feb0f3b886ef645781dc765df23 Mon Sep 17 00:00:00 2001
From: Dale Roberts <dsroberts@unimelb.edu.au>
Date: Wed, 16 Aug 2023 10:16:22 +1000
Subject: [PATCH] Update clef. Change mksquashfs command args

---
 scripts/build.sh        | 2 +-
 scripts/environment.yml | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/scripts/build.sh b/scripts/build.sh
index df12bc0..b0ba03a 100755
--- a/scripts/build.sh
+++ b/scripts/build.sh
@@ -183,7 +183,7 @@ pushd "${CONDA_TEMP_PATH}"
 ### Don't need to think too hard, squashfs are read-only
 chgrp -R "${APPS_USERS_GROUP}" squashfs-root
 
-mksquashfs squashfs-root "${FULLENV}".sqsh -b 1M -no-recovery -noI -noD -noF -noX -processors 8 2>/dev/null
+mksquashfs squashfs-root "${FULLENV}".sqsh -no-fragments -no-duplicates -no-sparse -no-exports -no-recovery -noI -noD -noF -noX -processors 8 2>/dev/null
 ### Stage this file and rename when we're ready
 cp "${FULLENV}".sqsh "${BUILD_STAGE_DIR}"/"${FULLENV}".sqsh.tmp
 set_apps_perms "${BUILD_STAGE_DIR}"/"${FULLENV}".sqsh.tmp
diff --git a/scripts/environment.yml b/scripts/environment.yml
index b008707..9db8f8f 100644
--- a/scripts/environment.yml
+++ b/scripts/environment.yml
@@ -116,7 +116,7 @@ dependencies:
 - nchash
 - umtools
 - cosima-cookbook
-- clef
+- clef>=1.5.1  # pinning to make sure it updates
 - nccmp
 - coecms-util
 - yamanifest