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instrument_ontology.expanded.yaml
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instrument_ontology.expanded.yaml
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name: Instrument_ontology
id: https://example.org/Instrument-ontology
imports:
- linkml:types
prefixes:
Instrument_ontology: https://example.org/Instrument-ontology
linkml: https://w3id.org/linkml/
default_prefix: Instrument_ontology
enums:
InstrumentOntology_ontology_options:
reachable_from:
source_ontology: obo:efo
source_nodes:
- EFO:0000548
relationship_types:
- rdfs:subClassOf
is_direct: false
include_self: false
permissible_values:
OBI:0400109:
text: OBI:0400109
description: homogenizer
meaning: OBI:0400109
OBI:0400104:
text: OBI:0400104
description: array scanner
meaning: OBI:0400104
OBI:0400103:
text: OBI:0400103
description: DNA sequencer
meaning: OBI:0400103
OBI:0400106:
text: OBI:0400106
description: centrifuge
meaning: OBI:0400106
OBI:0400105:
text: OBI:0400105
description: arrayer
meaning: OBI:0400105
OBI:0400108:
text: OBI:0400108
description: heating block
meaning: OBI:0400108
OBI:0400107:
text: OBI:0400107
description: computer
meaning: OBI:0400107
OBI:0400155:
text: OBI:0400155
description: water bath
meaning: OBI:0400155
OBI:0400114:
text: OBI:0400114
description: sonicator
meaning: OBI:0400114
OBI:0400113:
text: OBI:0400113
description: oligonucleotide synthesizer
meaning: OBI:0400113
OBI:0400116:
text: OBI:0400116
description: thermal cycler
meaning: OBI:0400116
OBI:0400115:
text: OBI:0400115
description: spectrophotometer
meaning: OBI:0400115
OBI:0400118:
text: OBI:0400118
description: vortexer
meaning: OBI:0400118
OBI:0400117:
text: OBI:0400117
description: vacuum dryer
meaning: OBI:0400117
OBI:0400110:
text: OBI:0400110
description: hybridization chamber
meaning: OBI:0400110
OBI:0400112:
text: OBI:0400112
description: liquid handler
meaning: OBI:0400112
OBI:0400111:
text: OBI:0400111
description: hybridization station
meaning: OBI:0400111
EFO:0011027:
text: EFO:0011027
description: Illumina HiSeq 1500
meaning: EFO:0011027
EFO:0010939:
text: EFO:0010939
description: oligonucleotide DNA microarray
meaning: EFO:0010939
EFO:0010938:
text: EFO:0010938
description: large-insert clone DNA microarray
meaning: EFO:0010938
EFO:0010962:
text: EFO:0010962
description: Illumina NextSeq 1000
meaning: EFO:0010962
EFO:0010963:
text: EFO:0010963
description: Illumina NextSeq 2000
meaning: EFO:0010963
EFO:0002698:
text: EFO:0002698
description: array
meaning: EFO:0002698
EFO:0002699:
text: EFO:0002699
description: high throughput sequencer
meaning: EFO:0002699
EFO:0009990:
text: EFO:0009990
description: Fluidigm C1 microfluidics platform
meaning: EFO:0009990
EFO:0009989:
text: EFO:0009989
description: long read sequencer
meaning: EFO:0009989
EFO:0008567:
text: EFO:0008567
description: Illumina HiSeq X
meaning: EFO:0008567
EFO:0008566:
text: EFO:0008566
description: Illumina NextSeq 550
meaning: EFO:0008566
EFO:0008565:
text: EFO:0008565
description: Illumina HiSeq 2500
meaning: EFO:0008565
EFO:0008563:
text: EFO:0008563
description: Illumina HiSeq 4000
meaning: EFO:0008563
EFO:0008564:
text: EFO:0008564
description: Illumina HiSeq 3000
meaning: EFO:0008564
OBI:0000049:
text: OBI:0000049
description: mass spectrometer
meaning: OBI:0000049
EFO:0002028:
text: EFO:0002028
description: microarray wash station
meaning: EFO:0002028
EFO:0004439:
text: EFO:0004439
description: AB SOLiD System 3.0
meaning: EFO:0004439
EFO:0004432:
text: EFO:0004432
description: 454 GS FLX sequencer
meaning: EFO:0004432
EFO:0004431:
text: EFO:0004431
description: 454 GS sequencer
meaning: EFO:0004431
EFO:0004434:
text: EFO:0004434
description: 454 GS Junior sequencer
meaning: EFO:0004434
EFO:0004433:
text: EFO:0004433
description: 454 GS FLX Titanium sequencer
meaning: EFO:0004433
EFO:0004436:
text: EFO:0004436
description: AB SOLiD 5500xl
meaning: EFO:0004436
EFO:0004435:
text: EFO:0004435
description: AB SOLiD System
meaning: EFO:0004435
EFO:0004438:
text: EFO:0004438
description: AB SOLiD 4 System
meaning: EFO:0004438
EFO:0004437:
text: EFO:0004437
description: AB SOLiD PI System
meaning: EFO:0004437
EFO:0004440:
text: EFO:0004440
description: AB SOLiD 5500
meaning: EFO:0004440
EFO:0004442:
text: EFO:0004442
description: AB SOLiD System 2.0
meaning: EFO:0004442
EFO:0004441:
text: EFO:0004441
description: AB SOLiD 4hq System
meaning: EFO:0004441
EFO:0004202:
text: EFO:0004202
description: Illumina Genome Analyzer IIx
meaning: EFO:0004202
EFO:0004201:
text: EFO:0004201
description: Illumina Genome Analyzer II
meaning: EFO:0004201
EFO:0004204:
text: EFO:0004204
description: Illumina HiSeq 1000
meaning: EFO:0004204
EFO:0004203:
text: EFO:0004203
description: Illumina HiSeq 2000
meaning: EFO:0004203
EFO:0004206:
text: EFO:0004206
description: 454 GS 20 sequencer
meaning: EFO:0004206
EFO:0004205:
text: EFO:0004205
description: Illumina MiSeq
meaning: EFO:0004205
EFO:0004200:
text: EFO:0004200
description: Illumina Genome Analyzer
meaning: EFO:0004200
EFO:0002701:
text: EFO:0002701
description: DNA array
meaning: EFO:0002701
EFO:0002702:
text: EFO:0002702
description: protein array
meaning: EFO:0002702
EFO:0002703:
text: EFO:0002703
description: SNP array
meaning: EFO:0002703
EFO:0002704:
text: EFO:0002704
description: tiling array
meaning: EFO:0002704
EFO:0009173:
text: EFO:0009173
description: Illumina NextSeq 500
meaning: EFO:0009173
EFO:0004291:
text: EFO:0004291
description: braces
meaning: EFO:0004291
EFO:0004903:
text: EFO:0004903
description: probe design element
meaning: EFO:0004903
EFO:0003739:
text: EFO:0003739
description: sequencer
meaning: EFO:0003739
EFO:0008632:
text: EFO:0008632
description: ONT MinION
meaning: EFO:0008632
EFO:0008631:
text: EFO:0008631
description: PacBio RS II
meaning: EFO:0008631
EFO:0008630:
text: EFO:0008630
description: PacBio Sequel System
meaning: EFO:0008630
EFO:0008636:
text: EFO:0008636
description: Illumina MiniSeq
meaning: EFO:0008636
EFO:0008635:
text: EFO:0008635
description: Illumina iSeq 100
meaning: EFO:0008635
EFO:0008634:
text: EFO:0008634
description: ONT PromethION
meaning: EFO:0008634
EFO:0008633:
text: EFO:0008633
description: ONT GridION X5
meaning: EFO:0008633
EFO:0008637:
text: EFO:0008637
description: Illumina NovaSeq 6000
meaning: EFO:0008637
EFO:0030075:
text: EFO:0030075
description: cDNA microarray
meaning: EFO:0030075
EFO:0030076:
text: EFO:0030076
description: methylation-specific microarray
meaning: EFO:0030076
classes:
InstrumentOntology:
attributes:
describedBy:
description: The URL reference to the schema.
schema_version:
description: Version number in major.minor.patch format.
text:
description: The full name of the instrument used.
title: Instrument
required: true
ontology:
description: An ontology term identifier in the form prefix:accession.
title: Instrument ontology ID
range: InstrumentOntology_ontology_options
ontology_label:
description: The preferred label for the ontology term referred to in the
ontology field. This may differ from the user-supplied value in the text
field.
title: Instrument ontology label