From 5afdfa1aed87b65d072acd40cd1be9a681e37c8b Mon Sep 17 00:00:00 2001
From: "pre-commit-ci[bot]"
 <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Date: Mon, 25 Sep 2023 23:21:02 +0000
Subject: [PATCH] [pre-commit.ci] pre-commit autoupdate
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

updates:
- [github.com/pre-commit/pre-commit-hooks: v4.0.1 → v4.4.0](https://github.com/pre-commit/pre-commit-hooks/compare/v4.0.1...v4.4.0)
- [github.com/commitizen-tools/commitizen: v2.37.0 → 3.10.0](https://github.com/commitizen-tools/commitizen/compare/v2.37.0...3.10.0)
- [github.com/adrienverge/yamllint.git: v1.26.3 → v1.32.0](https://github.com/adrienverge/yamllint.git/compare/v1.26.3...v1.32.0)
- [github.com/executablebooks/mdformat: 0.7.14 → 0.7.17](https://github.com/executablebooks/mdformat/compare/0.7.14...0.7.17)
- [github.com/python-jsonschema/check-jsonschema: 0.18.4 → 0.26.3](https://github.com/python-jsonschema/check-jsonschema/compare/0.18.4...0.26.3)
- [github.com/asottile/pyupgrade: v2.37.2 → v3.13.0](https://github.com/asottile/pyupgrade/compare/v2.37.2...v3.13.0)
- [github.com/psf/black: 22.6.0 → 23.9.1](https://github.com/psf/black/compare/22.6.0...23.9.1)
- https://github.com/charliermarsh/ruff-pre-commit → https://github.com/astral-sh/ruff-pre-commit
- [github.com/astral-sh/ruff-pre-commit: v0.0.225 → v0.0.291](https://github.com/astral-sh/ruff-pre-commit/compare/v0.0.225...v0.0.291)
- [github.com/kynan/nbstripout: 0.5.0 → 0.6.1](https://github.com/kynan/nbstripout/compare/0.5.0...0.6.1)
- [github.com/nbQA-dev/nbQA: 1.6.1 → 1.7.0](https://github.com/nbQA-dev/nbQA/compare/1.6.1...1.7.0)
- [github.com/snakemake/snakefmt: v0.6.0 → v0.8.4](https://github.com/snakemake/snakefmt/compare/v0.6.0...v0.8.4)
---
 .pre-commit-config.yaml | 24 ++++++++++++------------
 1 file changed, 12 insertions(+), 12 deletions(-)

diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index db0b06e..8144370 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -2,25 +2,25 @@ default_stages: [commit]
 
 repos:
   - repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v4.0.1
+    rev: v4.4.0
     hooks:
       - id: trailing-whitespace
       - id: end-of-file-fixer
       - id: check-yaml
 
   - repo: https://github.com/commitizen-tools/commitizen
-    rev: v2.37.0
+    rev: 3.10.0
     hooks:
       - id: commitizen
 
   - repo: https://github.com/adrienverge/yamllint.git
-    rev: v1.26.3
+    rev: v1.32.0
     hooks:
       - id: yamllint
         args: ["-d relaxed"]
 
   - repo: https://github.com/executablebooks/mdformat
-    rev: 0.7.14 # Use the ref you want to point at
+    rev: 0.7.17 # Use the ref you want to point at
     hooks:
       - id: mdformat
         # Optionally add plugins
@@ -29,38 +29,38 @@ repos:
           - mdformat-black
 
   - repo: https://github.com/python-jsonschema/check-jsonschema
-    rev: 0.18.4
+    rev: 0.26.3
     hooks:
       - id: check-github-workflows
 
   - repo: https://github.com/asottile/pyupgrade
-    rev: v2.37.2
+    rev: v3.13.0
     hooks:
       - id: pyupgrade
 
   - repo: https://github.com/psf/black
-    rev: 22.6.0
+    rev: 23.9.1
     hooks:
       - id: black
 
-  - repo: https://github.com/charliermarsh/ruff-pre-commit
-    rev: v0.0.225
+  - repo: https://github.com/astral-sh/ruff-pre-commit
+    rev: v0.0.291
     hooks:
       - id: ruff
 
   - repo: https://github.com/kynan/nbstripout
-    rev: 0.5.0
+    rev: 0.6.1
     hooks:
       - id: nbstripout
         args: ["--keep-output"]
 
   - repo: https://github.com/nbQA-dev/nbQA
-    rev: 1.6.1
+    rev: 1.7.0
     hooks:
       - id: nbqa-black
       - id: nbqa-ruff
 
   - repo: https://github.com/snakemake/snakefmt
-    rev: v0.6.0
+    rev: v0.8.4
     hooks:
       - id: snakefmt