diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index db0b06e..e75d2a1 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -2,25 +2,25 @@ default_stages: [commit]
 
 repos:
   - repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v4.0.1
+    rev: v4.6.0
     hooks:
       - id: trailing-whitespace
       - id: end-of-file-fixer
       - id: check-yaml
 
   - repo: https://github.com/commitizen-tools/commitizen
-    rev: v2.37.0
+    rev: v3.26.0
     hooks:
       - id: commitizen
 
   - repo: https://github.com/adrienverge/yamllint.git
-    rev: v1.26.3
+    rev: v1.35.1
     hooks:
       - id: yamllint
         args: ["-d relaxed"]
 
   - repo: https://github.com/executablebooks/mdformat
-    rev: 0.7.14 # Use the ref you want to point at
+    rev: 0.7.17 # Use the ref you want to point at
     hooks:
       - id: mdformat
         # Optionally add plugins
@@ -29,38 +29,38 @@ repos:
           - mdformat-black
 
   - repo: https://github.com/python-jsonschema/check-jsonschema
-    rev: 0.18.4
+    rev: 0.28.3
     hooks:
       - id: check-github-workflows
 
   - repo: https://github.com/asottile/pyupgrade
-    rev: v2.37.2
+    rev: v3.15.2
     hooks:
       - id: pyupgrade
 
   - repo: https://github.com/psf/black
-    rev: 22.6.0
+    rev: 24.4.2
     hooks:
       - id: black
 
-  - repo: https://github.com/charliermarsh/ruff-pre-commit
-    rev: v0.0.225
+  - repo: https://github.com/astral-sh/ruff-pre-commit
+    rev: v0.4.4
     hooks:
       - id: ruff
 
   - repo: https://github.com/kynan/nbstripout
-    rev: 0.5.0
+    rev: 0.7.1
     hooks:
       - id: nbstripout
         args: ["--keep-output"]
 
   - repo: https://github.com/nbQA-dev/nbQA
-    rev: 1.6.1
+    rev: 1.8.5
     hooks:
       - id: nbqa-black
       - id: nbqa-ruff
 
   - repo: https://github.com/snakemake/snakefmt
-    rev: v0.6.0
+    rev: v0.10.2
     hooks:
       - id: snakefmt