From 695351546e46e934296b1d8fa2024db5f70663b8 Mon Sep 17 00:00:00 2001 From: korikuzma Date: Tue, 30 Mar 2021 10:55:27 -0400 Subject: [PATCH] Update requirements --- requirements-dev.txt | 58 +++++++++++++++++++++++--------------------- requirements.txt | 26 +++++++++++--------- 2 files changed, 44 insertions(+), 40 deletions(-) diff --git a/requirements-dev.txt b/requirements-dev.txt index 367b089c..00c8fdf5 100644 --- a/requirements-dev.txt +++ b/requirements-dev.txt @@ -25,8 +25,8 @@ beautifulsoup4==4.9.3 biocommons.seqrepo==0.6.3 bioutils==0.5.2.post3; python_version >= '3.6' bleach==3.3.0; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3, 3.4' -boto3==1.17.20 -botocore==1.20.20; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3, 3.4, 3.5' +boto3==1.17.40 +botocore==1.20.40; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3, 3.4, 3.5' bs4==0.0.1 canonicaljson==1.4.0; python_version ~= '3.5' certifi==2020.12.5 @@ -41,7 +41,7 @@ coverage==5.5 coveralls==3.0.1 cssselect==1.1.0; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3' decorator==4.4.2 -defusedxml==0.6.0; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3, 3.4' +defusedxml==0.7.1; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3, 3.4' deprecation==2.1.0 distlib==0.3.1 docopt==0.6.2 @@ -50,35 +50,36 @@ entrypoints==0.3; python_version >= '2.7' fake-useragent==0.1.11 fastapi==0.63.0 filelock==3.0.12 -flake8-docstrings==1.5.0 -flake8==3.8.4 +flake8-docstrings==1.6.0 +flake8==3.9.0 frozendict==1.2 ga4gh.vrs==0.6.3rc0 gffutils==0.10.1 h11==0.12.0; python_version >= '3.6' httptools==0.1.1 humanfriendly==9.1; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3, 3.4' -identify==2.1.0; python_full_version >= '3.6.1' +identify==2.2.2; python_full_version >= '3.6.1' idna==2.10; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3' +importlib-metadata==3.10.0; python_version >= '3.6' inflection==0.5.1; python_version >= '3.5' iniconfig==1.1.1 ipykernel==5.5.0; python_version >= '3.5' ipython-genutils==0.2.0 -ipython==7.21.0; python_version >= '3.7' +ipython==7.22.0; python_version >= '3.7' jedi==0.18.0; python_version >= '3.6' jinja2==2.11.3; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3, 3.4' jmespath==0.10.0; python_version >= '2.6' and python_version not in '3.0, 3.1, 3.2' json5==0.9.5 jsonschema==3.2.0 -jupyter-client==6.1.11; python_version >= '3.5' +jupyter-client==6.1.12; python_version >= '3.5' jupyter-core==4.7.1; python_version >= '3.6' jupyter-packaging==0.7.12; python_version >= '3.6' -jupyter-server==1.4.1; python_version >= '3.6' +jupyter-server==1.5.1; python_version >= '3.6' jupyterlab-pygments==0.1.2 jupyterlab-server==2.3.0; python_version >= '3.6' -jupyterlab==3.0.9 -keyring==22.3.0; python_version >= '3.6' -lxml==4.6.2; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3, 3.4' +jupyterlab==3.0.12 +keyring==23.0.1; python_version >= '3.6' +lxml==4.6.3; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3, 3.4' markdown==3.3.4; python_version >= '3.6' markupsafe==1.1.1; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3' mccabe==0.6.1 @@ -90,8 +91,8 @@ nbformat==5.1.2; python_version >= '3.5' nest-asyncio==1.5.1; python_version >= '3.5' networkx==2.5; python_version >= '3.6' nodeenv==1.5.0 -notebook==6.2.0; python_version >= '3.5' -numpy==1.20.1; python_version >= '3.7' +notebook==6.3.0; python_version >= '3.6' +numpy==1.20.2; python_version >= '3.7' obonet==0.2.6; python_version >= '3' packaging==20.9; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3' pandas==1.2.3; python_full_version >= '3.7.1' @@ -102,21 +103,21 @@ pexpect==4.8.0; sys_platform != 'win32' pickleshare==0.7.5 pkginfo==1.7.0 pluggy==0.13.1; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3' -pre-commit==2.10.1 +pre-commit==2.11.1 prometheus-client==0.9.0 -prompt-toolkit==3.0.16; python_full_version >= '3.6.1' +prompt-toolkit==3.0.18; python_full_version >= '3.6.1' ptyprocess==0.7.0; os_name != 'nt' py==1.10.0; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3' -pycodestyle==2.6.0; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3' +pycodestyle==2.7.0; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3' pycparser==2.20; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3' pydantic==1.8.1 -pydocstyle==5.1.1; python_version >= '3.5' +pydocstyle==6.0.0; python_version >= '3.6' pyee==8.1.0 pyfaidx==0.5.9.5 -pyflakes==2.2.0; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3' -pygments==2.8.0; python_version >= '3.5' +pyflakes==2.3.1; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3' +pygments==2.8.1; python_version >= '3.5' pyparsing==2.4.7; python_version >= '2.6' and python_version not in '3.0, 3.1, 3.2' -pyppeteer==0.2.5; python_full_version >= '3.6.1' and python_version < '4' +pyppeteer==0.2.5; python_full_version >= '3.6.1' and python_full_version < '4.0.0' pyquery==1.4.3 pyrsistent==0.17.3; python_version >= '3.5' pysam==0.16.0.1 @@ -132,32 +133,33 @@ requests-html==0.10.0; python_version >= '3.6' requests-toolbelt==0.9.1 requests==2.25.1 rfc3986==1.4.0 -s3transfer==0.3.4 +s3transfer==0.3.6 send2trash==1.5.0 seqrepo==0.0.0 simplejson==3.17.2; python_version >= '2.5' and python_version not in '3.0, 3.1, 3.2' six==1.15.0; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2' sniffio==1.2.0; python_version >= '3.5' snowballstemmer==2.1.0 -soupsieve==2.2; python_version >= '3.0' +soupsieve==2.2.1; python_version >= '3.0' sqlparse==0.4.1; python_version >= '3.5' starlette==0.13.6; python_version >= '3.6' tabulate==0.8.9 -terminado==0.9.2; python_version >= '3.6' +terminado==0.9.4; python_version >= '3.6' testpath==0.4.4 toml==0.10.2; python_version >= '2.6' and python_version not in '3.0, 3.1, 3.2' tornado==6.1; python_version >= '3.5' -tqdm==4.58.0; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3' +tqdm==4.59.0; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3' traitlets==5.0.5; python_version >= '3.7' -twine==3.3.0 +twine==3.4.1 typing-extensions==3.7.4.3 -urllib3==1.26.3; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3, 3.4' and python_version < '4' +urllib3==1.26.4; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3, 3.4' and python_full_version < '4.0.0' uvicorn==0.13.4 uvloop==0.15.2 vcfpy==0.13.3 -virtualenv==20.4.2; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3' +virtualenv==20.4.3; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3' w3lib==1.22.0 wcwidth==0.2.5 webencodings==0.5.1 websockets==8.1 yoyo-migrations==7.3.1 +zipp==3.4.1; python_version >= '3.6' diff --git a/requirements.txt b/requirements.txt index 18b2a4bb..8e163205 100644 --- a/requirements.txt +++ b/requirements.txt @@ -15,8 +15,8 @@ beautifulsoup4==4.9.3 biocommons.seqrepo==0.6.3 bioutils==0.5.2.post3; python_version >= '3.6' bleach==3.3.0; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3, 3.4' -boto3==1.17.20 -botocore==1.20.20; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3, 3.4, 3.5' +boto3==1.17.40 +botocore==1.20.40; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3, 3.4, 3.5' bs4==0.0.1 canonicaljson==1.4.0; python_version ~= '3.5' certifi==2020.12.5 @@ -38,14 +38,15 @@ h11==0.12.0; python_version >= '3.6' httptools==0.1.1 humanfriendly==9.1; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3, 3.4' idna==2.10; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3' +importlib-metadata==3.10.0; python_version >= '3.6' inflection==0.5.1; python_version >= '3.5' jmespath==0.10.0; python_version >= '2.6' and python_version not in '3.0, 3.1, 3.2' jsonschema==3.2.0 -keyring==22.3.0; python_version >= '3.6' -lxml==4.6.2; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3, 3.4' +keyring==23.0.1; python_version >= '3.6' +lxml==4.6.3; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3, 3.4' markdown==3.3.4; python_version >= '3.6' networkx==2.5; python_version >= '3.6' -numpy==1.20.1; python_version >= '3.7' +numpy==1.20.2; python_version >= '3.7' obonet==0.2.6; python_version >= '3' packaging==20.9; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3' pandas==1.2.3; python_full_version >= '3.7.1' @@ -54,9 +55,9 @@ pkginfo==1.7.0 pydantic==1.8.1 pyee==8.1.0 pyfaidx==0.5.9.5 -pygments==2.8.0; python_version >= '3.5' +pygments==2.8.1; python_version >= '3.5' pyparsing==2.4.7; python_version >= '2.6' and python_version not in '3.0, 3.1, 3.2' -pyppeteer==0.2.5; python_full_version >= '3.6.1' and python_version < '4' +pyppeteer==0.2.5; python_full_version >= '3.6.1' and python_full_version < '4.0.0' pyquery==1.4.3 pyrsistent==0.17.3; python_version >= '3.5' pysam==0.16.0.1 @@ -69,18 +70,18 @@ requests-html==0.10.0; python_version >= '3.6' requests-toolbelt==0.9.1 requests==2.25.1 rfc3986==1.4.0 -s3transfer==0.3.4 +s3transfer==0.3.6 seqrepo==0.0.0 simplejson==3.17.2; python_version >= '2.5' and python_version not in '3.0, 3.1, 3.2' six==1.15.0; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2' -soupsieve==2.2; python_version >= '3.0' +soupsieve==2.2.1; python_version >= '3.0' sqlparse==0.4.1; python_version >= '3.5' starlette==0.13.6; python_version >= '3.6' tabulate==0.8.9 -tqdm==4.58.0; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3' -twine==3.3.0 +tqdm==4.59.0; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3' +twine==3.4.1 typing-extensions==3.7.4.3 -urllib3==1.26.3; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3, 3.4' and python_version < '4' +urllib3==1.26.4; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3, 3.4' and python_full_version < '4.0.0' uvicorn==0.13.4 uvloop==0.15.2 vcfpy==0.13.3 @@ -88,3 +89,4 @@ w3lib==1.22.0 webencodings==0.5.1 websockets==8.1 yoyo-migrations==7.3.1 +zipp==3.4.1; python_version >= '3.6'