diff --git a/requirements.txt b/requirements.txt index 7ac3ee8..640e0c8 100644 --- a/requirements.txt +++ b/requirements.txt @@ -1,90 +1,156 @@ agct==0.1.0.dev2 -aiofiles==24.1.0 -annotated-types==0.7.0 -anyio==4.4.0 -asttokens==2.4.1 -async-timeout==4.0.3 -asyncpg==0.29.0 -attrs==24.2.0 -biocommons.seqrepo==0.6.9 +aiofiles==23.1.0 +annotated-types==0.6.0 +anyio==3.7.1 +appdirs==1.4.4 +appnope==0.1.3 +asttokens==2.2.1 +async-lru==2.0.4 +asyncio-atexit==1.0.1 +asyncpg==0.28.0 +attrs==23.1.0 +backcall==0.2.0 +bcrypt==4.2.0 +beautifulsoup4==4.12.2 +biocommons.seqrepo==0.6.5 bioutils==0.5.8.post1 -black==24.8.0 -boto3==1.35.3 -botocore==1.35.3 +black==23.10.1 +boto3==1.28.11 +botocore==1.31.11 +bs4==0.0.1 +bump-pydantic==0.7.0 canonicaljson==2.0.0 -certifi==2024.7.4 +certifi==2023.7.22 +cffi==1.17.1 cfgv==3.4.0 -charset-normalizer==3.3.2 -click==8.1.7 +charset-normalizer==3.2.0 +click==8.1.6 coloredlogs==15.0.1 -configparser==7.1.0 +configparser==6.0.0 cool_seq_tool==0.7.1 -coverage==7.6.1 +coverage==7.3.2 +cryptography==43.0.1 +cssselect==1.2.0 +Cython==3.0.0 decorator==5.1.1 -distlib==0.3.8 -executing==2.0.1 -fastapi==0.112.1 -filelock==3.15.4 +Deprecated==1.2.14 +distlib==0.3.7 +docutils==0.20.1 +executing==1.2.0 +fake-useragent==1.1.3 +fastapi==0.100.0 +filelock==3.12.4 fusor==0.4.4 ga4gh.vrs==2.0.0a10 +ga4gh.vrsatile.pydantic==0.2.0 gene-normalizer==0.4.0 +googleapis-common-protos==1.65.0 h11==0.14.0 hgvs==1.5.4 httpcore==1.0.5 -httpx==0.27.0 +httpx==0.27.2 humanfriendly==10.0 -identify==2.6.0 -idna==3.7 -importlib_metadata==8.4.0 +identify==2.5.30 +idna==3.4 +importlib-metadata==6.8.0 +inflection==0.5.1 iniconfig==2.0.0 -ipython==8.26.0 -jedi==0.19.1 -Jinja2==3.1.4 +ipython==8.14.0 +jedi==0.18.2 +Jinja2==3.1.2 jmespath==1.0.1 -MarkupSafe==2.1.5 -matplotlib-inline==0.1.7 +jsonschema==3.2.0 +libcst==1.1.0 +lxml==4.9.3 +Markdown==3.4.4 +markdown-it-py==3.0.0 +MarkupSafe==2.1.3 +matplotlib-inline==0.1.6 +mdurl==0.1.2 mypy-extensions==1.0.0 -nodeenv==1.9.1 -packaging==24.1 +nest-asyncio==1.6.0 +nodeenv==1.8.0 +numpy==1.25.1 +opentelemetry-api==1.27.0 +opentelemetry-exporter-otlp-proto-common==1.27.0 +opentelemetry-exporter-otlp-proto-http==1.27.0 +opentelemetry-instrumentation==0.48b0 +opentelemetry-instrumentation-httpx==0.48b0 +opentelemetry-instrumentation-requests==0.48b0 +opentelemetry-instrumentation-threading==0.48b0 +opentelemetry-instrumentation-urllib==0.48b0 +opentelemetry-proto==1.27.0 +opentelemetry-sdk==1.27.0 +opentelemetry-semantic-conventions==0.48b0 +opentelemetry-util-http==0.48b0 +packaging==23.2 +pandas==2.0.3 +paramiko==3.5.0 +parse==1.19.1 Parsley==1.3 -parso==0.8.4 -pathspec==0.12.1 -pexpect==4.9.0 -platformdirs==4.2.2 -pluggy==1.5.0 -polars==1.5.0 +parso==0.8.3 +pathspec==0.11.2 +pexpect==4.8.0 +pickleshare==0.7.5 +platformdirs==3.11.0 +pluggy==1.3.0 +polars==1.3.0 pre-commit==3.8.0 -prompt_toolkit==3.0.47 -psycopg2==2.9.9 +prompt-toolkit==3.0.39 +protobuf==4.25.5 +psutil==5.9.8 +psycopg2==2.9.6 psycopg2-binary==2.9.9 ptyprocess==0.7.0 -pure_eval==0.2.3 +pure-eval==0.2.2 +pycparser==2.22 pydantic==2.4.2 +pydantic-to-typescript==1.0.10 pydantic-to-typescript2==1.0.4 pydantic_core==2.10.1 -Pygments==2.18.0 -pysam==0.22.1 -pytest==8.3.2 -pytest-asyncio==0.24.0 -pytest-cov==5.0.0 -python-dateutil==2.9.0.post0 -PyYAML==6.0.2 -requests==2.32.3 +pyee==8.2.2 +Pygments==2.15.1 +pyliftover==0.4 +PyNaCl==1.5.0 +pyppeteer==1.0.2 +pyquery==2.0.0 +pyrsistent==0.19.3 +pysam==0.21.0 +pysftp==0.2.9 +pytest==7.4.2 +pytest-asyncio==0.21.1 +pytest-cov==4.1.0 +python-dateutil==2.8.2 +python-jsonschema-objects==0.4.2 +pytz==2023.3 +PyYAML==6.0.1 +requests==2.31.0 +requests-html==0.10.0 +rich==13.6.0 ruff==0.5.0 -s3transfer==0.10.2 +s3transfer==0.6.1 six==1.16.0 -sniffio==1.3.1 -sqlparse==0.5.1 -stack-data==0.6.3 -starlette==0.38.2 +sniffio==1.3.0 +soupsieve==2.4.1 +sqlparse==0.4.4 +stack-data==0.6.2 +starlette==0.27.0 +synapseclient==4.5.1 tabulate==0.9.0 tqdm==4.66.5 -traitlets==5.14.3 -typing_extensions==4.12.2 -urllib3==1.26.19 -uvicorn==0.30.6 -virtualenv==20.26.3 -wags_tails==0.1.4 -wcwidth==0.2.13 +traitlets==5.9.0 +typer==0.9.0 +typing-inspect==0.9.0 +typing_extensions==4.7.1 +tzdata==2023.3 +urllib3==1.26.20 +uta-tools==0.1.3 +uvicorn==0.23.1 +virtualenv==20.24.5 +w3lib==2.1.1 +wags_tails==0.1.3 +wcwidth==0.2.6 +websockets==10.4 +wrapt==1.16.0 yoyo-migrations==8.2.0 -zipp==3.20.0 +zipp==3.16.2