From 3d6eed327acf6f0f0561065e90ee7e2d0a41dc89 Mon Sep 17 00:00:00 2001
From: Katie Stahl <kathryn.stahl@nationwidechildrens.org>
Date: Thu, 26 Sep 2024 12:45:37 -0400
Subject: [PATCH] test: add test case for get exon coordinates where genomic
 coord occurs between exons

---
 server/tests/integration/test_utilities.py | 26 ++++++++++++++++++++++
 1 file changed, 26 insertions(+)

diff --git a/server/tests/integration/test_utilities.py b/server/tests/integration/test_utilities.py
index c027335b..8ff4b3a8 100644
--- a/server/tests/integration/test_utilities.py
+++ b/server/tests/integration/test_utilities.py
@@ -219,6 +219,32 @@ def check_coords_response(response: dict, expected_response: dict):
         check_coords_response,
     )
 
+    # check correct response for genomic coordinate that occurs between exons (should get nearest junction)
+    await check_response(
+        "/api/utilities/get_exon?chromosome=NC_000001.11&end=154191900&transcript=NM_152263.3",
+        {
+            "coordinates_data": {
+                "gene": "TPM3",
+                "genomic_ac": "NC_000001.11",
+                "tx_ac": "NM_152263.3",
+                "seg_end": {
+                    "exon_ord": 0,
+                    "offset": 1,
+                    "genomic_location": {
+                        "type": "SequenceLocation",
+                        "sequenceReference": {
+                            "type": "SequenceReference",
+                            "refgetAccession": "SQ.Ya6Rs7DHhDeg7YaOSg1EoNi3U_nQ9SvO",
+                        },
+                        "start": 154191900,
+                    },
+                },
+                "errors": [],
+            }
+        },
+        check_coords_response,
+    )
+
 
 @pytest.mark.asyncio()
 async def test_get_sequence_id(check_response):