From 03def778e3be9edb29d208b47685e8173f9f69e3 Mon Sep 17 00:00:00 2001
From: ay-lab <ferhatay@lji.org>
Date: Fri, 2 Sep 2022 23:38:06 -0700
Subject: [PATCH] Update README.md

---
 utility/README.md | 8 ++++++++
 1 file changed, 8 insertions(+)

diff --git a/utility/README.md b/utility/README.md
index 3b7c136..f6a98fc 100644
--- a/utility/README.md
+++ b/utility/README.md
@@ -56,3 +56,11 @@ Options:
         -h, --help
                 Show this help message and exit
 ```                
+
+# Merge continuous differential compartments 
+
+The mergeDEcompartments.sh script will help the user to merge continuous differential compartments. Use the following command to merge the differential compartments (FDR < 0.1 by default, change the value inside the script)
+
+``` 
+./mergeDEcompartments.sh -f <path/to/differential.intra_sample_group.pcOri.bedGraph> -d <distance in base pairs>
+```