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S.Alves edited this page Sep 2, 2020 · 23 revisions

Pipeline askoR - User Guide

Fabrice Legeai, Kevin Gazengel, Susete Alves C.
INRAE Centre Bretagne - Normandie, UMR 1349 iGEPP

ABSTRACT

AskoR is a pipeline for the analysis of gene expression data, using edgeR. Several steps are performed: data filters (cpm method), normalize this filtered data, look at the correlation of our data, run differential expression analysis, compare contrast, GO enrichment and co-expression.

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