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multiple bam support #66

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multiple bam support #66

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Commits on Apr 4, 2013

  1. add multiple file support for genomecov, only tested for : 

    genomeCoverageBed -ibams listbam -g chromsize
genomeCoverageBed -is listbed -g chromsize

options added:
    -is     The input list file is <bed/gff/vcf>.
    -ibams      The input list file each line is filename in BAM format.
    @xubeisi
    xubeisi committed Apr 4, 2013
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  2. listbed file didn't report seperate file, debugged

    @xubeisi
    xubeisi committed Apr 4, 2013
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Commits on Apr 5, 2013

  1. works for -ibams, multiple bed files can be use as cat *.bed | genome… 

    …cov -i stdin -g genome.size
    @xubeisi
    xubeisi committed Apr 5, 2013
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