From 29046a18c8ad4a307eddcb17e4bb3c96e4d11213 Mon Sep 17 00:00:00 2001 From: utas-raymondng Date: Mon, 23 Sep 2024 18:02:24 +1000 Subject: [PATCH] Fix test case after rounding --- .../service/IndexerServiceTests.java | 8 +- .../resources/canned/associated/self.json | 1296 ++++++++++++++--- .../test/resources/canned/sample4_stac.json | 228 +-- .../test/resources/canned/sample5_stac.json | 2 +- .../test/resources/canned/sample6_stac.json | 64 +- 5 files changed, 1222 insertions(+), 376 deletions(-) diff --git a/indexer/src/test/java/au/org/aodn/esindexer/service/IndexerServiceTests.java b/indexer/src/test/java/au/org/aodn/esindexer/service/IndexerServiceTests.java index 5e4ab07f..1ba2309c 100644 --- a/indexer/src/test/java/au/org/aodn/esindexer/service/IndexerServiceTests.java +++ b/indexer/src/test/java/au/org/aodn/esindexer/service/IndexerServiceTests.java @@ -134,7 +134,7 @@ public void verifyGetDocumentByUUID() throws IOException { String expected = indexerObjectMapper.readTree(expectedData).toPrettyString(); String actual = indexerObjectMapper.readTree(test).toPrettyString(); - + logger.info(actual); JSONAssert.assertEquals(expected, actual, JSONCompareMode.STRICT); } catch (JSONException e) { throw new RuntimeException(e); @@ -165,7 +165,7 @@ public void verifyAssociatedRecordIndexer() throws IOException{ String expected = indexerObjectMapper.readTree(expectedData).toPrettyString(); String actual = indexerObjectMapper.readTree(resultJson).toPrettyString(); - + logger.info(actual); JSONAssert.assertEquals(expected, actual, JSONCompareMode.STRICT); } catch (JSONException e) { throw new RuntimeException(e); @@ -196,7 +196,7 @@ public void verifyLogoLinkAddedOnIndex() throws IOException { String expected = indexerObjectMapper.readTree(expectedData).toPrettyString(); String actual = indexerObjectMapper.readTree(test).toPrettyString(); - + logger.info(actual); JSONAssert.assertEquals(expected, actual, JSONCompareMode.STRICT); } catch (JSONException e) { throw new RuntimeException(e); @@ -223,7 +223,7 @@ public void verifyThumbnailLinkAddedOnIndex() throws IOException { String expected = indexerObjectMapper.readTree(expectedData).toPrettyString(); String actual = indexerObjectMapper.readTree(test).toPrettyString(); - + logger.info(actual); JSONAssert.assertEquals(expected, actual, JSONCompareMode.STRICT); } catch (JSONException e) { throw new RuntimeException(e); diff --git a/indexer/src/test/resources/canned/associated/self.json b/indexer/src/test/resources/canned/associated/self.json index bd43fe2a..27ccc13c 100644 --- a/indexer/src/test/resources/canned/associated/self.json +++ b/indexer/src/test/resources/canned/associated/self.json @@ -1,232 +1,1078 @@ { - "title" : "IMOS - Animal Tracking Facility Satellite Relay Tagging Program", - "description" : "The Animal Tracking Facility (formerly known as the Australian Animal Tracking And Monitoring System (AATAMS)) is a coordinated marine animal tagging project. Satellite Relay Data Loggers (SRDL) (most with CTDs, and some also with fluorometers) are used to explore how marine mammal behaviour relates to their oceanic environment. Loggers developed at the University of St Andrews Sea Mammal Research Unit transmit data in near real time via the Argo satellite system. The Satellite Relay Data Loggers are deployed on marine mammals, including Elephant Seals, Weddell Seals, Australian Fur Seals, Australian Sea Lions, New Zealand Fur Seals. Data parameters measured by the instruments include time, conductivity (salinity), temperature, speed, fluorescence (available in the future) and depth. Data is being collected in the Southern Ocean, the Great Australian Bight, and off the South-East Coast of Australia.", - "extent" : { - "bbox" : [ [ -180.0, -80.0, 180.0, -30.0 ], [ 40.0, -80.0, 180.0, -30.0 ], [ -180.0, -80.0, -130.0, -30.0 ] ], - "temporal" : [ [ "2007-04-03T06:00:00Z", null ], [ "2007-04-03T06:00:00Z", null ] ] + "title": "IMOS - Animal Tracking Facility Satellite Relay Tagging Program", + "description": "The Animal Tracking Facility (formerly known as the Australian Animal Tracking And Monitoring System (AATAMS)) is a coordinated marine animal tagging project. Satellite Relay Data Loggers (SRDL) (most with CTDs, and some also with fluorometers) are used to explore how marine mammal behaviour relates to their oceanic environment. Loggers developed at the University of St Andrews Sea Mammal Research Unit transmit data in near real time via the Argo satellite system. The Satellite Relay Data Loggers are deployed on marine mammals, including Elephant Seals, Weddell Seals, Australian Fur Seals, Australian Sea Lions, New Zealand Fur Seals. Data parameters measured by the instruments include time, conductivity (salinity), temperature, speed, fluorescence (available in the future) and depth. Data is being collected in the Southern Ocean, the Great Australian Bight, and off the South-East Coast of Australia.", + "extent": { + "bbox": [ + [ + -180.0, + -80.0, + 180.0, + -30.0 + ], + [ + 40.0, + -80.0, + 180.0, + -30.0 + ], + [ + -180.0, + -80.0, + -130.0, + -30.0 + ] + ], + "temporal": [ + [ + "2007-04-03T06:00:00Z", + null + ], + [ + "2007-04-03T06:00:00Z", + null + ] + ] }, - "summaries" : { - "score" : 79, - "status" : "onGoing", - "credits" : [ "Australia’s Integrated Marine Observing System (IMOS) is enabled by the National Collaborative Research Infrastructure Strategy (NCRIS). It is operated by a consortium of institutions as an unincorporated joint venture, with the University of Tasmania as Lead Agent.", "Sydney Institute of Marine Science (SIMS)", "French National Center for Scientific Research (CNRS)", "Macquarie University", "University of Tasmania (UTAS)", "Australian Antarctic Division (AAD)", "National Institute of Water and Atmosphere (NIWA)", "CSIRO Oceans and Atmosphere", "Stockholm University (SU)", "Shanghai Ocean University", "Hokkaido University" ], - "scope" : { - "code" : "series", - "name" : "IMOS Sub-Facility Level record" + "summaries": { + "score": 79, + "status": "onGoing", + "credits": [ + "Australia’s Integrated Marine Observing System (IMOS) is enabled by the National Collaborative Research Infrastructure Strategy (NCRIS). It is operated by a consortium of institutions as an unincorporated joint venture, with the University of Tasmania as Lead Agent.", + "Sydney Institute of Marine Science (SIMS)", + "French National Center for Scientific Research (CNRS)", + "Macquarie University", + "University of Tasmania (UTAS)", + "Australian Antarctic Division (AAD)", + "National Institute of Water and Atmosphere (NIWA)", + "CSIRO Oceans and Atmosphere", + "Stockholm University (SU)", + "Shanghai Ocean University", + "Hokkaido University" + ], + "scope": { + "code": "series", + "name": "IMOS Sub-Facility Level record" }, - "statement" : "The Animal Tracking Facility Satellite Relay Tag data has been supplied to the Australian Ocean Data Network (AODN) by participants, via the St Andrews University Sea Mammal Research Unit. Tags used on species: Australian Fur Seal, Australian Sea Lion, New Zealand Fur Seal and Southern Elephant Seal - CTD Satellite Relay Data Loggers (SRDL). Collect conductivity, temperature and depth information. On some Australian Sea Lions - CTD/Fluorometer Satellite Relay Data Loggers (SRDL). Collects conductivity, temperature, fluorescence and depth information. Weddell Seals - Satellite Relay Data Loggers (SRDL). Collect temperature, speed and depth information.", - "creation" : "2020-06-26T11:46:35", - "revision" : "2022-05-13T04:48:51", - "dataset_group" : "sample", - "dataset_provider" : "IMOS", - "update_frequency" : "real-time", - "proj:geometry" : { - "geometries" : [ { - "type" : "Polygon", - "coordinates" : [ [ [ 40, -80 ], [ 180, -80 ], [ 180, -30 ], [ 40, -30 ], [ 40, -80 ] ] ] - }, { - "type" : "Polygon", - "coordinates" : [ [ [ -180, -80 ], [ -130, -80 ], [ -130, -30 ], [ -180, -30 ], [ -180, -80 ] ] ] - } ], - "type" : "GeometryCollection" + "statement": "The Animal Tracking Facility Satellite Relay Tag data has been supplied to the Australian Ocean Data Network (AODN) by participants, via the St Andrews University Sea Mammal Research Unit. Tags used on species: Australian Fur Seal, Australian Sea Lion, New Zealand Fur Seal and Southern Elephant Seal - CTD Satellite Relay Data Loggers (SRDL). Collect conductivity, temperature and depth information. On some Australian Sea Lions - CTD/Fluorometer Satellite Relay Data Loggers (SRDL). Collects conductivity, temperature, fluorescence and depth information. Weddell Seals - Satellite Relay Data Loggers (SRDL). 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} ], - "phones" : [ { - "roles" : [ "voice" ], - "value" : "61 3 6226 7488" - }, { - "roles" : [ "facsimile" ], - "value" : "61 3 6226 2107" - } ], - "links" : [ { - "href" : "http://imos.org.au/aodn.html", - "type" : "WWW:LINK-1.0-http--link", - "title" : "Website of the Australian Ocean Data Network (AODN)" - } ] - }, { - "roles" : [ "principalInvestigator", "about" ], - "organization" : "Department of Biological Sciences, Macquarie University", - "name" : "Harcourt, Rob", - "position" : "Animal Tracking Facility Leader", - "emails" : [ "robert.harcourt@mq.edu.au" ], - "addresses" : [ { - "deliveryPoint" : [ "Marine Predator Research Group", "Department of Biological Sciences, Macquarie University", "North Ryde" ], - "city" : "Sydney", - "country" : "Australia", - "postalCode" : "2109", - "administrativeArea" : "New South Wales" - } ], - "phones" : [ ], - "links" : [ { - "href" : "http://web.science.mq.edu.au/directory/listing/person.htm?id=rharcour", - "type" : "WWW:LINK-1.0-http--link", - "title" : "Maquarie University staff profile for Rob Harcourt" - } ] - }, { - "roles" : [ "distributor", "metadata" ], - "organization" : "Integrated Marine Observing System (IMOS)", - "name" : "", - "position" : "Data Officer", - "emails" : [ "info@aodn.org.au" ], - "addresses" : [ { - "deliveryPoint" : [ "University of Tasmania", "Private Bag 110" ], - "city" : "Hobart", - "country" : "Australia", - "postalCode" : "7001", - "administrativeArea" : "Tasmania" - } ], - "phones" : [ { - "roles" : [ "voice" ], - "value" : "61 3 6226 7488" - }, { - "roles" : [ "facsimile" ], - "value" : "61 3 6226 2107" - } ], - "links" : [ { - "href" : "http://imos.org.au/aodn.html", - "type" : "WWW:LINK-1.0-http--link", - "title" : "Website of the Australian Ocean Data Network (AODN)" - } ] - }, { - "roles" : [ "resourceProvider", "citation" ], - "organization" : "Integrated Marine Observing System (IMOS)", - "emails" : [ "imos@imos.org.au" ], - "addresses" : [ { - "deliveryPoint" : [ "Private Bag 110" ], - "city" : "Hobart", - "country" : "Australia", - "postalCode" : "7001", - "administrativeArea" : "Tasmania" - } ], - "phones" : [ { - "roles" : [ "voice" ], - "value" : "61 3 6226 7549" - }, { - "roles" : [ "facsimile" ], - "value" : "61 3 6226 2107" - } ], - "links" : [ { - "href" : "http://www.imos.org.au/html", - "type" : "WWW:LINK-1.0-http--link", - "title" : "Website for the Integrated Marine Observing System" - } ] - } ], - "languages" : [ { - "code" : "eng", - "name" : "English" - } ], - "links" : [ { - "href" : "https://catalogue-imos.aodn.org.au:443/geonetwork/srv/api/records/4637bd9b-8fba-4a10-bf23-26a511e17042/attachments/seal_tag_pic_s.png", - "rel" : "preview", - "type" : "image" - }, { - "href" : "https://catalogue-imos.aodn.org.au:443/geonetwork/srv/api/records/4637bd9b-8fba-4a10-bf23-26a511e17042", - "rel" : "describedby", - "type" : "text/html", - "title" : "Full metadata link" - }, { - "href" : "https://licensebuttons.net/l/by/4.0/88x31.png", - "rel" : "license", - "type" : "image/png" - }, { - "href" : "http://creativecommons.org/licenses/by/4.0/", - "rel" : "license", - "type" : "text/html" - }, { - "href" : "uuid:a35d02d7-3bd2-40f8-b982-a0e30b64dc40", - "rel" : "parent", - "type" : "application/json", - "title" : "{\"title\":\"IMOS - Animal Tracking Facility\",\"recordAbstract\":\"The IMOS Animal Tracking Facility (formerly known as the Australian Animal Tracking And Monitoring System (AATAMS)) represents the higher biological monitoring of the marine environment for the IMOS program. Currently the facility uses acoustic technology, CTD satellite trackers and bio loggers to monitor coastal and oceanic movements of marine animals from the Australian mainland to the sub-Antarctic islands and as far south as the Antarctic continent. Acoustic monitoring is a powerful tool for observing tagged marine animals with networks or cross shelf arrays (curtains) of receivers, allowing animals to be monitored over scales of hundreds of metres to thousands of kilometres. An array or network consists of a series of acoustic receivers that are strategically deployed on the sea floor for 1 to 10 years (depending on receiver type and battery life) with the ability to download data from the receivers as often as required. NCRIS and partner investments will target areas identified by regional nodes. VR2's deployed in conjunction with other moorings will provide information on long range movement of a variety of species including endangered and protected species (i.e. White Sharks and Grey Nurse Sharks), and valuable commercial species (i.e. Tuna) Curtains are mobile and can be deployed in different configurations for specific IMOS projects. The continued coordination of acoustic tag codes between researchers means that acoustic array around Australia will provide the combined infrastructure to monitor movement of highly migratory marine species between all jurisdictions. CTD satellite trackers and bio loggers currently deployed on a large range of animals are collecting a wide range of data. This includes behavioural and physical data such as the depth, temperature, salinity and movement effort of individual marine animals. The Animal Tracking Facility is set up to collect data over a long period of time. This sustained approach will enable researchers to assess the effects of climate change, ocean acidification and other physical changes that affect animals within the marine environment.\"}" - }, { - "href" : "uuid:0ede6b3d-8635-472f-b91c-56a758b4e091", - "rel" : "sibling", - "type" : "application/json", - "title" : "{\"title\":\"IMOS - Animal Tracking Facility - Acoustic Tracking - Quality Controlled Detections (2007 - 2017) (SUPERSEDED BY ONGOING COLLECTION)\",\"recordAbstract\":\"In its first decade, the Integrated Marine Observing System's Animal Tracking Facility (formerly known as the Australian Animal Tracking And Monitoring System (AATAMS)) established a permanent array of acoustic receivers around Australia to detect the movements of tagged marine animals in coastal waters. Simultaneously, the Animal Tracking Facility developed a centralised national database (https://animaltracking.aodn.org.au/) to encourage collaborative research across the Australian research community and provide unprecedented opportunities to quantify individual behaviour across a broad range of taxa. This static dataset presents the first 10 years (2007 - 2017) of quality-controlled animal detections collated via the IMOS Australian Animal Acoustic Telemetry Database. The dataset comprises 48.5 million valid detections collected at 1891 receiving stations around Australia, and consists of detection data for 3523 tags deployed on 117 species (fish, sharks, rays, reptiles, and mammals), with distances travelled ranging from a few to thousands of kilometres. To access subsequent additions in a dynamic database, please refer to the following metadata record: https://catalogue-imos.aodn.org.au/geonetwork/srv/api/records/541d4f15-122a-443d-ab4e-2b5feb08d6a0\"}" - }, { - "href" : "uuid:06b09398-d3d0-47dc-a54a-a745319fbece", - "rel" : "child", - "type" : "application/json", - "title" : "{\"title\":\"IMOS - Animal Tracking Facility - Satellite Relay Tagging Program - Delayed mode data\",\"recordAbstract\":\"The Animal Tracking Facility (formerly known as the Australian Animal Tracking And Monitoring System (AATAMS)) is a coordinated marine animal tagging project. Satellite Relay Data Loggers (SRDL) (most with CTDs, and some also with fluorometers) are used to explore how marine mammal behaviour relates to their oceanic environment. Loggers developed at the University of St Andrews Sea Mammal Research Unit transmit data in near real time via the Argo satellite system. 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These statistics are based on all the data recorded by the SRDL and so are not prone to distortion by variations in the efficiency of transmission via Argos. ** For data after October 2018, please consult IMOS - Animal Tracking Facility - Satellite Relay Tagging Program - Delayed mode data with quality-controlled locations (https://catalogue-imos.aodn.org.au:443/geonetwork/srv/api/records/70f148b1-7040-4fad-944a-456413c95472), to access data with improved satellite locations. 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110" + ], + "city": "Hobart", + "country": "Australia", + "postalCode": "7001", + "administrativeArea": "Tasmania" + } + ], + "phones": [ + { + "roles": [ + "voice" + ], + "value": "61 3 6226 7488" + }, + { + "roles": [ + "facsimile" + ], + "value": "61 3 6226 2107" + } + ], + "links": [ + { + "href": "http://imos.org.au/aodn.html", + "type": "WWW:LINK-1.0-http--link", + "title": "Website of the Australian Ocean Data Network (AODN)" + } + ] + }, + { + "roles": [ + "principalInvestigator", + "about" + ], + "organization": "Department of Biological Sciences, Macquarie University", + "name": "Harcourt, Rob", + "position": "Animal Tracking Facility Leader", + "emails": [ + "robert.harcourt@mq.edu.au" + ], + "addresses": [ + { + "deliveryPoint": [ + "Marine Predator Research Group", + "Department of Biological Sciences, Macquarie University", + "North Ryde" + ], + "city": "Sydney", + "country": "Australia", + "postalCode": "2109", + "administrativeArea": "New South Wales" + } + ], + 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Currently the facility uses acoustic technology, CTD satellite trackers and bio loggers to monitor coastal and oceanic movements of marine animals from the Australian mainland to the sub-Antarctic islands and as far south as the Antarctic continent. Acoustic monitoring is a powerful tool for observing tagged marine animals with networks or cross shelf arrays (curtains) of receivers, allowing animals to be monitored over scales of hundreds of metres to thousands of kilometres. An array or network consists of a series of acoustic receivers that are strategically deployed on the sea floor for 1 to 10 years (depending on receiver type and battery life) with the ability to download data from the receivers as often as required. NCRIS and partner investments will target areas identified by regional nodes. VR2's deployed in conjunction with other moorings will provide information on long range movement of a variety of species including endangered and protected species (i.e. White Sharks and Grey Nurse Sharks), and valuable commercial species (i.e. Tuna) Curtains are mobile and can be deployed in different configurations for specific IMOS projects. The continued coordination of acoustic tag codes between researchers means that acoustic array around Australia will provide the combined infrastructure to monitor movement of highly migratory marine species between all jurisdictions. CTD satellite trackers and bio loggers currently deployed on a large range of animals are collecting a wide range of data. This includes behavioural and physical data such as the depth, temperature, salinity and movement effort of individual marine animals. The Animal Tracking Facility is set up to collect data over a long period of time. This sustained approach will enable researchers to assess the effects of climate change, ocean acidification and other physical changes that affect animals within the marine environment.\"}" + }, + { + "href": "uuid:0ede6b3d-8635-472f-b91c-56a758b4e091", + "rel": "sibling", + "type": "application/json", + "title": "{\"title\":\"IMOS - Animal Tracking Facility - Acoustic Tracking - Quality Controlled Detections (2007 - 2017) (SUPERSEDED BY ONGOING COLLECTION)\",\"recordAbstract\":\"In its first decade, the Integrated Marine Observing System's Animal Tracking Facility (formerly known as the Australian Animal Tracking And Monitoring System (AATAMS)) established a permanent array of acoustic receivers around Australia to detect the movements of tagged marine animals in coastal waters. Simultaneously, the Animal Tracking Facility developed a centralised national database (https://animaltracking.aodn.org.au/) to encourage collaborative research across the Australian research community and provide unprecedented opportunities to quantify individual behaviour across a broad range of taxa. This static dataset presents the first 10 years (2007 - 2017) of quality-controlled animal detections collated via the IMOS Australian Animal Acoustic Telemetry Database. The dataset comprises 48.5 million valid detections collected at 1891 receiving stations around Australia, and consists of detection data for 3523 tags deployed on 117 species (fish, sharks, rays, reptiles, and mammals), with distances travelled ranging from a few to thousands of kilometres. 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These statistics are based on all the data recorded by the SRDL and so are not prone to distortion by variations in the efficiency of transmission via Argos. ** For data after October 2018, please consult IMOS - Animal Tracking Facility - Satellite Relay Tagging Program - Delayed mode data with quality-controlled locations (https://catalogue-imos.aodn.org.au:443/geonetwork/srv/api/records/70f148b1-7040-4fad-944a-456413c95472), to access data with improved satellite locations. In the near future all historical delayed mode data will be reprocessed with the new quality control (QC) process, to improve the accuracy of the satellite location data, and this dataset will be replaced by the new QC’d one. **\"}" + } + ], + "license": "Creative Commons Attribution 4.0 International License", + "providers": [ + { + "name": "Integrated Marine Observing System (IMOS)", + "roles": [ + "distributor" + ], + "url": "http://imos.org.au/aodn.html" + } + ], + "themes": [ + { + "concepts": [ + { + "id": "Oceans | Ocean Temperature | Water Temperature" + }, + { + "id": "Oceans | Salinity/density | Conductivity" + }, + { + "id": "Oceans | Marine Biology | Marine Mammals" + }, + { + "id": "Oceans | Marine Biology | Marine Birds" + } + ], + "scheme": "", + "description": "GCMD", + "title": "NASA/Global Change Master Directory Earth Science Keywords Version 5.3.8" + }, + { + "concepts": [ + { + "id": "Satellite Tag" + }, + { + "id": "CTD Satellite Relay Data Logger" + }, + { + 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